Gene detail

Detailed information of alvinactis_v1_g10018 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g10018	TNF RECEPTOR ASSOCIATED FACTOR	chr_5	1503866	1509212	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g10018

atgctcagaagtacaagacgacggccattttggattttagacatgtggaagaagacttcaacgattcgtgtggaattctacgagcaaaatcttgcactttttactcgtcggagtgttaagttaagtgttgaagacgagaagatcttcaaatttgagatcgccaccccttccattcgtgagggagctggggttggcaggTATggagctgtcccagcagcaaataacgaagagaccaCAAGTACGGTCGaattgcaaagaacagtatcacatcaattatatggtgaaaccaactatcacatggatgtacgtactactggtgttcaatacatgagaaataatccagaaaggtttattgagagtaatacagcttactcatgggtaaagtacatatctaatatgtctcgacaaggtacatggtgtgatgcactaatcatacaagcagttgcagatgctatgaatcttaccatccgtattacagaatcaaatgagggctttgcagcattcactgttatgcgcatgtgcgagacaattcaGTCATGTGCAGATGCTATACTTCAGTGTCCAAAGCCAAGTTGCCCCGACGATGGCGAAGAAGTTCAAATAGATCAACTTTTTAAAGACAGATGTGCGGCGAAGGAGATTGCGGCACTTGAGTGTTATTGTCCGCAGAAAGCGAGTGGATGTAAAtggcagggcacagtgcttatgctgcagggtcatcaatgtccttatgaaaagGTGCCCTGTATTATGGATGGATGTAACAAGCTGATACTCAGATGTCAGCTACCACGTCATGTCGACAAAGAGTGTGAATACAGGGGAGTTCAATGCATGTACTGCAGTGTTTTAGTCCCTGAGATTTTCCTGGAAAAGCATTTTGAGAAATGTCTGAAATATCTGCTTGAGTGTGACAATGTGTGTGGTGCTAAAGATATCCCAAGAGAACGCATGCAAGAACACAAACATATTGAATGTCCTTTGGAAGTGAAGTTCTGTCGACTTCATCAGTTTGGCTGCGACTTTAAGGGCATGAAGAATGAAATTGAAGAGCACATGGAGGATTCGCAACACAAACATTTGATTCTTGCAGTAAAATCAGCCGAGAAATCACACTTCAAACTACAAGAGCTGACACAGAAAACTGCAGGAATTCAGGAGAAGAACAGACTTCTTGAAAGTTACATGACCACTCAAAAGGAAGCGATCTCATCTGCACGTGAAACACTCTCAACACAGCAAATCAAACTGAACAAACTAGAAACATTTCTTGAAGAACAGAAGAACATCTTACTAGATGACATGGCGCCGCCAAAGAGTGAAAAAGAAACAAGAGAAACGCAGAGTTTGAATAGAAGTTTTCTTGAGCTTGAAAAGAAGATTGAAAGTTTTTCCCAGAAGATAAAAAGTATTCAAGAAGATGTTTTTCTCGGCAGCAGGCCGGCACATCCTCCCGATAAAAGGCTGAGCAGACAATGCGAACAGATGGATCACACGCTTGCTTTACACGATATACAAATTTCAGAACAGAATCTACGTCTTCAAATCCTCGATGCGTGTACCTACGACGGTACGTTCATTTGGAAGATCGATAATTACAGTCAACGGTTCAGTGATGCCTTGAGTAACAAAACACTTTCTTTATATAGTCCACCTTTCTACACAAGTCGCTTTGGCTATAAGTTATGCGCACGGGTTTACTTGAATGGGGATGGCAGTGGAAAAGGTACGCATATGTCACTCTTTATCTCAGTCATGATGGGTGAATACGACCCAATATTGCCCTGGCCCTTCACCAAAAAGATAACACTGAAATTATTGGACCAAAACAGAATTATGGATATTGTGGAGACGTTTTTGCCAGATCCAAAGAGCAACAGTTTTCAGCAGCCAAAGTCAGATATGAACATTGCGTCGGGCTGTCCTAAATTCTGCGCTCATTCTCGCCTACAGAGCAATGGATACGTGAAAGATAATGTAGTGTTTGTAAAAGTTACTGTAGGATAG

Transcript

alvinactis_v1_g10018

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR003323	Domain	OTU domain	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-