Gene detail

Detailed information of XP_032906425.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032906425.1	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	NC_045989.1	26540138	26588556	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032906425.1

ATGTATTGGGATGTCAGCCATGAAGACACAGCTGAGGACAGCATGCCACAGGAAACTGGGACTGCCGATGAGGCTATGGGAAGCAAGCAGTCGGGGCTGGAGAGCCCAGCCTTCGAGCAGTGCTCAACCCTACAGAGTGTACAGGCAGCTTACAGTGCAGGCGAGGTGGAGCAGGCTCAACATCTCGCCCGCTTGTTGTGTGAGGAAGCTGGCAGCAGTGAAGAGAAGTCTCAGCTCCTGACCTTTGCTGCCTCCCATGGAGATGCCGAGACAGTTCGGTTCCTGGTCCAGGACGTGCAGGTGGGATTGTCCAAGGAGCCCAGTCACGAAAACCCCATCATCATTGCCACACATCAGGGTCACGAGGAGGTCGTCAAAGTCTTCTTGGATTCGATGCCAGGTGCATGCATGGACCTGCTGAGCTGCATGTTGGCAGCAGCCTGCCGGCAAGGTCACATGTCACTGGTGCAGCTGCTGGTGGTGAAGTACAAGGTGGAGGTGGACAGCTGTGGGATGAGGACCCAGAACCACCCTGTCATCATGGGGCAGCCTCTGTATGCAGCGATGCAGGCAGGGAATGAAGAGATCGCTGCCTTCCTCCTGGAGAATGGAGCGCACTTCACCTCATATGTACTGATGGACCATCCACAGCTCAGCAAGCAACTGCTCAGGACCCGGTTTACAGAACCCAGCCCGTGTGAAGAGACGTACACTCACACAGTGGCACAGCCCCTCACTATGGGCCAGTCACTGAAGTGGTCTCGCCTGGAGCTGCCTTGGTTGGACCTGGATTGGTTCATAGATGTGTCTATTCAAGTAACAGAGCTCGATCTGGCTAGGAACAACCTCACCCTCCTCCCTTCCATCATTCCTTGGGGTTTAGTGCATCTCAGAAAGCTCAATGTGTCTGCAAACCAGCTGAAGGAATTGCCGAATACCATCTCGTCAGAAGAGATCCTCTGTACAGGAATTCTGGAGATGGACGTATCACGGAACCAGCTGACCTCTCTACCCACAGGCATCTTGCATCTCCCAAAGCTGCAGAAACTCAAGGCCTCCAACAACCTACTTGACCGGTTATTTGATGAAGAGAAAGCGACGAACTGGATTGGATTACGAAAGCTGAGCGAGATTGATGTGTCTGACAACAGATTGGAGATCTTGCCAACGTCCTTGCTCCATTGCTTCAAGTCCCTCAGCTGCCTCATTGCTGCTGGGAATGTACTCAGATGCTTTCCTGAACCTTGGGCCTGTGGTTTGAAATTCTGCAATGTTTCCAGAAATTCATTGGAATCTCTACCAAACAGCCTTTGTGACTTCTGGAAGAACTATCTGAAGGAAGCAGATTTTTCCAACAATTTACTGAAGGAGTTACCATCAAACTTCTTTGAGCTTCAGGCACTGAATTCCCTAAAGCTCTCAGGCAATCAGTTGCAATCACTTCCCTCTGTGGACAGCTGGCAATGCCCCAGCCTCAGGTCGCTCGATCTCTCTCGAAACCATTTTGGAAAGGGAGAGGAACCGGCCAAGACCAGAAGAGTCACGTTCTTTACACCACGACTGAAGAGAGGGTTGGACACGATTTCAGTGATTGAATTCCCACACATCCTGGGCGAATGTTTGGAGATTCTGCACCTGGACGGTAATTTCCTGGACTCAGTCCCACCATCTGTGTGTTCGCTGCGTACACTGTCCGAGCTCTACCTTTCAAATAACCCTGGCATCCGGGAGCTTCCTGCCGAGCTGGGCCAGTTGTCTAATCTCTGGCAGCTGGACATCGACCAGTTAAACATCTCAAACGTACCGATAGAGATCAGGAATCAAGGACCCACGGCAGTGCTGGCCTTCCTCAGAGCACACCTGCGGAAAGCTGAGCCCTGCCGGCTGTTGAAGATGATTGTCGTTGGACCACCTCGCCAGGGGAAGACCACGCTCCTGGAGACCCTTCAGACGGGGAAACCCCCACAGCCCATGTACAAAGAGAGTAGCATTCACACCACTATCTGGGAACTGCAGCGACCTGCTGCAGTGAAGACCAAGGTGGATTCTGTTGTGTTTAATGTTTGGGACATTGGAGGCGCTGCTAAAATGGCCACGGTGAACCAGTGTTTCTTCACGGAGAAGGCCCTGTATGTGGTGGTGTGGAACCTGGCTCTTGGTGAGGAAGCAGTGGCCAACTTACAGTCGTGGCTCCTCAACATTGAGGCCAAGGCTCCGAATGCCACTGTGATTGTGGTGGGAACTCACCTGGATTTGATCGACACCAAGTTCCGTACAGAGAGGTTGGCGACACTGCGCGCGTACATCCTGGCGTTGTGTCGTTCCCCGTCTGGGCCCCGAGCGAGCGGGTACCCTGACATCAGCTGCCGGAACCTACATGAATTATCGTGTAGAACCCTGGATGGGTTGGACGGGCTTCGTAAACTGATCTTTCAAGTTGCGTGTGGCATGAGAGACGCAGGGAGTGTAACGACTTCACAGAAGCTGGTGGGAAGATTGATACCCAGGAGTTACCTCAAGCTACGGACCGCAGTTGTAGAGGAGCAGCAGAGACGGAGTGACCACGATGAGGTCCAGTACATAACTGACCAGCAGCTGCAAGAGATGGTGCCGCACACTCCGGGCAATGACATCAACGACTTTGAGGACCTGCAGGCTGCTCTCGCCTTCCTGATTGAAACAGGCGCAGTCCTGCACTTCCCAGACACAAGCCATGGGCTGCGCAATCTCTACTTCCTGCATCCCGTCTGGCTCTCCGAATGCTTGGAGAAGATTATCAATATCAAGGCGTCACGATCCCTCGCCATGAACGGAGTGATCCGGTTGACGGAGCTGCGAAAACTGCTGTTGGGGACGGGCTTCACGCAGCAGACCGAGGAACAGTACTTGCAGTTCCTGGCCAAGTTTGAGATCGCCCTTCCCATCGCCAATGACAGCTACCTCCTCCCTCACCTACTGCCGTCCAAGCCGGGCATCGACAGCAGCAAGCTGCATCAGCCGGGCAACTGCACCATTCAGAGGCTTTTCAAGATGAATTTTGTGCCCATTGGTTTCTGGCAACGGTTTATCGCCCGAATTTTGATCAGCCTTTCGGACATGGATGCACAGCTTGTTGAAAATGAGAAGAATGTGAAGCGGTACAGAGGGAGCCTGGCTTCAGTTTACAGCTTCACCGGGACCCGCCGCCGAAACCGCTGCAGCACCTTCCGCGTGAAACGGAACCAAACCATCTACTGGCAAGAAGGTTTGCAGCTGACCTACATGGGGGGCTGCCTCAGCGTCGAATCCTCAGAGATGAACTGGAAAAGGAAGAAAAGTGCTGGAATAAAAATCGTTTGCCAGTCGGAAACGCGAGACTTCTCAGCCGTGGCCTTCATCACTGATCACGTCAACTCTCTGATTGACCAGTGGTTTCCAGCTCTGACAGCTACAGAATCAGATGGGAGCCCGCTGGTTGAGCAGTACGTTCCCTGCCCTCACTGCTCACTCCCGGACACACAGCGAGGGCAGGCACATCTCCAGGGACAAGACCCACACTACTTCAGCATGGAGGACTGTCTCCTCACTGCCATTGAGCACACGGACATCTCTTGTCCAAACCACCCCGCCACCCCCGTGCCTCTCGATGAGTTGGTCCCAGAGATCTTCATGACCGACTTCCCATCACGGTTATTTCTGGATGTGAACTGTTTGGAACAAAAAGAAACCTCAGACCATATCCTGGGTCAGGGAGGGAGTGGAGCGATCGTGTACAAAGCCAAGTACAATAAGATACCGGTAGCAATCAAGAAGTTTCATTTCAAAAATTACCAAGCACTATCTGGTAATTCTCGCACAGATTCGATGTTGCGGCACCTGGAGGCGCTGGAGGTGATGCGGAGTTTCTCAGAGTTCCGCCAGGAGAGCAGCATCCTGCACACGCTGCAGCACCCGTGCATCGTGTCCCTGGTCGGCCTCTGCATACACCCACTCTGCTTCGCTCTAGAGCTCGCCCCCTTGGGCAGCCTCAACAACGTGCTCAAACAGCACTCGAAAGGGACCTCCTTCATGCCCCTGGGCCACATGCTGACCTACAGAATTGCCTACCAGATTGCTCTGGGCCTGGCCTATCTCCACAGGAAGAAGATCATCTTCTGTGACCTGAAGTCTGATAATGTCCTGGTTTGGTCTCTGGACGTCTCCTGCCCCATCAACGTCAAGCTCTCTGACTACGGTGTGAGCCGACAGTCCTTTCATGAGGGGGCTCTGGGGATAGAAGGCACTCCGGGTTATCAGGCCCCAGAAATCCTGCCCGGGATTGTTTACGATGAAAAGGTGGACCTGTTCTCGTTCGGCATGGTCCTGTACGAGCTGCTGTCTGGACAGCGACCGATCCTTGGCCACCACCAGGTGCAGATTGTGAAGAAACTGTCCAAAGGTATCCGACCTCTGCTGGGATCGCTGGAGGAGGTGCAGTTCCACCCGATGCAGAGCCTGATGATCGAGTGCTGGGACACAAAGCCGGAGAAGCGTCCGGCAGCGAGCTGTGTCGTCAGGTTGATGCGAGATCCCAGCTTCCCAGTCTTCATGTACACCCTGCAGACGGGTAGACAACACCTGTTCTGTCCTTCACTGGACCACGAGCGCACCGTCATCTTCTGGAATGAAGAAGGAAGCAAAAGGAACTACAGTGTGGTGAATATTGACAAAGGGCTGATAGAGGTTGACCACATCAGCTGTCCAGGAGCTGGGCTGAGCTGCCAACTGAAGCTTCACACTGCACTGTGGACCGCTACTAAGGACCAGAAGATCCAGGTGTACAGTCTGAAGGGGATGTGTCCACTCAAGGTGCCGCTCCGCGTACTCGATGTTCCTGCCGTCGTCACCTGCTTCCTGTCCGTATCCCGTGGAAACCAGAAGTCTCCGCTGATGCTGGCCGGTATGGCTGATGGGATGGTTGCTGTTTATTCCTTGGCCAGTGAACTTCCCTGGGATTGGTCTGCCTACCTGTGCTCACGTTCTGCAAACAACCTGCGGTTTAAGATTCCCGACAGCGACCGGCGTCAGAATGCTTACCCCGTCACCGACATCTTAGCGGTCAACAATGAATCGGAGGTGTGGTACACCAATGGTCCTGGGATCCTGGTCATTGACACACTGACCGTTGAGATCAGTCGCCGGTTAGAACCTTACCAGCCGCCCTCCCAGGTCATCTCCATGGTGTCTAACCTGGGCTGTGATGGAGAAGAGACGGTCTGGTGTCTGGATGACAAGACAAGTACCTTGATCATGTACCGTGCCTACCAGGTGTGTGCCCATTATGCCTGCAATGACTGCAATCCATTGAGAGACATGTTTCCCATCCAGCACCCTGTTGGTGTCATGGCAACATTAGCCATCCAGGACAGCAGTGAATCCCATCCCACAGATACAACCTTCATTGTCACTGATGAGGTTGGGACACAGATCTTACAGCATTGTGACTCTGTGACCGATTACTGTTCAATATCCTCCTGCTCTTCCTCCGCCAACAACACAAACATCCATTTCCCCTCCAGCCCAACAAGTATTCCCAATTCTCCCGACTTCGAGGGACCAGGAACGCTGAACGTTCTGGGCGGTGGGTCCCAGGACATCACCCCAACAGCAGAGAATCGGCAACAGCTGCGGGCTGTCAAAGTGCTGGCCGTGAGGGACACACTATGGGTTCCCAGGGAGGGTGGGGACATTGTGGTGATCGAGCTGCAGACACAGATTGGCGGTGAGTCGGGCAGAGTGGTGTCAGTGCTGAGGGCTGGAGGAATGAATGAGGACAGCTCCCTGGTTGAGGCAGCCCTGGTGGCACAGGACACGGTGGTTTGCTGTCTGCTGGACGCGGCTGGAGAGTGGCGCCTGTGTGTGTGGAGGGGCTGGGGCTCCCAACAGTTCCAGCTCTTCTACCAGTCCCTCGAAGAGCTGGGGACGATGGAAGTCGGCATGCGCAGACGGAGGTAG

Transcript

Protein

XP_032906425.1

MYWDVSHEDTAEDSMPQETGTADEAMGSKQSGLESPAFEQCSTLQSVQAAYSAGEVEQAQHLARLLCEEAGSSEEKSQLLTFAASHGDAETVRFLVQDVQVGLSKEPSHENPIIIATHQGHEEVVKVFLDSMPGACMDLLSCMLAAACRQGHMSLVQLLVVKYKVEVDSCGMRTQNHPVIMGQPLYAAMQAGNEEIAAFLLENGAHFTSYVLMDHPQLSKQLLRTRFTEPSPCEETYTHTVAQPLTMGQSLKWSRLELPWLDLDWFIDVSIQVTELDLARNNLTLLPSIIPWGLVHLRKLNVSANQLKELPNTISSEEILCTGILEMDVSRNQLTSLPTGILHLPKLQKLKASNNLLDRLFDEEKATNWIGLRKLSEIDVSDNRLEILPTSLLHCFKSLSCLIAAGNVLRCFPEPWACGLKFCNVSRNSLESLPNSLCDFWKNYLKEADFSNNLLKELPSNFFELQALNSLKLSGNQLQSLPSVDSWQCPSLRSLDLSRNHFGKGEEPAKTRRVTFFTPRLKRGLDTISVIEFPHILGECLEILHLDGNFLDSVPPSVCSLRTLSELYLSNNPGIRELPAELGQLSNLWQLDIDQLNISNVPIEIRNQGPTAVLAFLRAHLRKAEPCRLLKMIVVGPPRQGKTTLLETLQTGKPPQPMYKESSIHTTIWELQRPAAVKTKVDSVVFNVWDIGGAAKMATVNQCFFTEKALYVVVWNLALGEEAVANLQSWLLNIEAKAPNATVIVVGTHLDLIDTKFRTERLATLRAYILALCRSPSGPRASGYPDISCRNLHELSCRTLDGLDGLRKLIFQVACGMRDAGSVTTSQKLVGRLIPRSYLKLRTAVVEEQQRRSDHDEVQYITDQQLQEMVPHTPGNDINDFEDLQAALAFLIETGAVLHFPDTSHGLRNLYFLHPVWLSECLEKIINIKASRSLAMNGVIRLTELRKLLLGTGFTQQTEEQYLQFLAKFEIALPIANDSYLLPHLLPSKPGIDSSKLHQPGNCTIQRLFKMNFVPIGFWQRFIARILISLSDMDAQLVENEKNVKRYRGSLASVYSFTGTRRRNRCSTFRVKRNQTIYWQEGLQLTYMGGCLSVESSEMNWKRKKSAGIKIVCQSETRDFSAVAFITDHVNSLIDQWFPALTATESDGSPLVEQYVPCPHCSLPDTQRGQAHLQGQDPHYFSMEDCLLTAIEHTDISCPNHPATPVPLDELVPEIFMTDFPSRLFLDVNCLEQKETSDHILGQGGSGAIVYKAKYNKIPVAIKKFHFKNYQALSGNSRTDSMLRHLEALEVMRSFSEFRQESSILHTLQHPCIVSLVGLCIHPLCFALELAPLGSLNNVLKQHSKGTSFMPLGHMLTYRIAYQIALGLAYLHRKKIIFCDLKSDNVLVWSLDVSCPINVKLSDYGVSRQSFHEGALGIEGTPGYQAPEILPGIVYDEKVDLFSFGMVLYELLSGQRPILGHHQVQIVKKLSKGIRPLLGSLEEVQFHPMQSLMIECWDTKPEKRPAASCVVRLMRDPSFPVFMYTLQTGRQHLFCPSLDHERTVIFWNEEGSKRNYSVVNIDKGLIEVDHISCPGAGLSCQLKLHTALWTATKDQKIQVYSLKGMCPLKVPLRVLDVPAVVTCFLSVSRGNQKSPLMLAGMADGMVAVYSLASELPWDWSAYLCSRSANNLRFKIPDSDRRQNAYPVTDILAVNNESEVWYTNGPGILVIDTLTVEISRRLEPYQPPSQVISMVSNLGCDGEETVWCLDDKTSTLIMYRAYQVCAHYACNDCNPLRDMFPIQHPVGVMATLAIQDSSESHPTDTTFIVTDEVGTQILQHCDSVTDYCSISSCSSSANNTNIHFPSSPTSIPNSPDFEGPGTLNVLGGGSQDITPTAENRQQLRAVKVLAVRDTLWVPREGGDIVVIELQTQIGGESGRVVSVLRAGGMNEDSSLVEAALVAQDTVVCCLLDAAGEWRLCVWRGWGSQQFQLFYQSLEELGTMEVGMRRRR

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051564	Family	Leucine-rich repeat receptor-like kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48055	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-