Gene detail

Detailed information of XP_032906116.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032906116.1	RAS-RELATED PROTEIN RAB	NC_045989.1	24552543	24602845	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032906116.1

ATGAGCCGGCCGGACCTGCGGAGGCTTTTCTCGGCGTGTGACCTGAACCGCTCCGGGGAGATCGAGCTGGAGGATTTCCGCGGCGTTTGCCGGGAGCTGGGGGTCTCCAGTTGGCAGGTGTCGCCGCTCTTCAACAAGCTGGACGTGGACAACGACGGCTCCATCAACTTCAACGACTTCACGGCCGGCTACGAGGAGGTGTCCGAGGTCCTTCACCTCTCCTCCCTCGGCAGCGACGGCCCGCAGGCGGCGCATAGACTCGACCACGATGAGCTGCAGGAGAGGTTCGGGGATGGGGTGCAGTTCCTGCGGAGCCGGGAGAAGTTGCTGCAGTTCCATCAGCTGATCCGAGCCGAGCCAGACCAGGCGCTGTGCCATCAATACGAGGAACTGATCCGCGGGCTGATTAAAGACGGCAGGATCCAAACTATGGAGACCGACAACCTGGAGCTGGCTCTCAAGCGGACAGAGGCAACAGCTGAAGTACGTCTGTCCGAAATGGAAGAAGACCTGCAACAGCAGACTATTAAACTGGAGCAGAAAATCCGAGGCGAGGAGCAGCGGAGACTCGAAGCCAAAGCAGCAGAAATGGAGAAGCGTCACGAGGCGGAGCGAGCGGATCTACAGGTGGTGATTGACCGGATGAAAAAGCTTAATGAAGACCTGTGGAACTCCAATTCTAAAGGAGATGCCTCAGCATTGAAGGAACAATTGGATGAATTGACCCAGGAAAACGAGCACTTGCGGAGTTCCTTTCTGAAGAGCCAGACGGGCGTTTCCATTCTCGAAGCCTCATTGGACAAAGTCAAAAATGAACTTTCTGATCATCACCTTGAGCGGAGTCGGACAAAAGAAGTTATAAAGAAACTAGCTGAAGAGAACGACGTCTCCACAAATCAGATACGGATGCTTCAAGAAGCTAATAAGGGCCTTTACGATAGCAATAATGGATTAAGAAGTACTTTGGAAAAGAATCACAGCACAAATAAAAAGCATTCCATAGTTGAACCAGAGGTGAAAGAATCAAATGGATTGGACACAATGAATTACAACAGCGTGGCCAATGGTGATGCTGACCCCATGATTTTGAATAACGATGTATCCAGGCGCAGAATCTCGGCAGTAGCAAGCTGGGCCCACCGATACCTGGATAGTGGTGTGTCTACGACCCAGGATGTGGCCAATTATTCCTCAGATGAATATGACAGCGAGTGCAGTGATGATTCCCTTGAAACGATGCACTACAGTTACTCGTACGTGGCCTCCGATGCAGAGACGCCAGAGGTGAAGACGGAGGTGGAGGGAGTAGCTGGAAGCTGGAAACCCTCGAGACCCGTCAGTCGCTGCAGTTCCACCGCATCTTCCCGGAGACGCCTTCCTGCATTCACACCCAAGACGGCAGGCTTTGTGGGCGATGACTTCCGAGGAGATGGACCACTCTACAGACTTGTCCTTGCAGGAGATGCGGGGTCGGGCAAATCCAGCTTCCTGCTGCGTTTGTGTATGAACGAATTTAAAGCACACATTCAGACCACGTTGGGAGTTGACTTCCAAATGAAGAAGCTACTGGTTGATGGAGAAAGTGCCACGTTACAGATCTGGGATACTGCCGGTCAGGAGAGGTTTCGCAGCATTGCAAAGTCTTATTTCCGAAAAGCTCACGGTGTGTTATTGCTGTATGATGTGACTTCAGAGATCAGTTTCTTGAATGTCCGGGAATGGATCGATGAAATTAAGAATTCGACTGATGGTCCGATACCAATCATTTTAATTGGGAATAAACTTGATTTAAGAAACGAGAGGTCTCAAGCACAGCGAGGTGCTGTATTGACTGCCCATGGAGAGAAGCTAGCTATGACATATAATGCTCTGTTTTGTGAAACAAGTGCAAAGGACGGGACCAATGTGGTAGAAGCAGTTCTGCACCTCGCCAGAGAAGCGAAAAAGAATGCAAGCCTCAGGAAAAGTGAACCGGAGATGAAACTACTACCAACTGATGGGAAAAAAATGATGAATAATTGCTGTAAAATGTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-