Gene detail

Detailed information of XP_032904518.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032904518.1	DENN DOMAIN-CONTAINING	NC_045987.1	20224605	20717309	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032904518.1

ATGGGGTCCAGGATCAAGAAACATCCAACGACTACTTTTGAAGTGTATGCAGAAGTTACACAGCCCGAGTCTGGTGGTTCAGATCCTGAGGTGCGGAGGCAATTCCCTGAGGACTTCAGCGACCAGGAAGTTCTGCAGACATTGACCAAGTTTTGCTTCCCTTTCTATGTGGACAGCCTTACAGTCAGTCAAGTTGGCCAGAACTTTACGTTTGTACTCACTGACATTGACAGCAAGCAGAGGTTTGGATTCTGCCGCTTATCTTCTGGGGCTAAGACTTGCTCCTGCTTCCTAAGCTATTTACCTTGGTTTGAGGTTTTCTACAAGCTTCTGAACATCTTAGCCGAATACACTGCCAAAGGCCAGGACTGTCAGTGGAAGAATTTGCTGGATATACTATACTGCATTGTTCCTCCGGAACCAGGCGTGGCTGTGCAGTTAGGTGTGCATTTGTACTTTACTCCTCCAAATAACGAAGACCTTCCGAGCATACCTGAAAATAGAAACCTGACAGAGTATTTTGTAGCTGTAGATGTCAACAACATGCTCCACCTTTATGCCAGTATGCTGTACGAGCGGCGAGTCCTCATCACCTGCAGCAAGCTAAGCACTTTAACAGCCTGTATCCATGGGTCTGCAGCAATGCTATACCCTATGTATTGGCAGCATGTTTACATCCCTGTCCTCCCTCCACATCTATTGGACTACTGCTGTGCTCCAATGCCCTATCTGATAGGAGTGCATTCAAGTTTAATGGAGAAAGTGAGGAACATGGCTTTAGAAGATGTAGTGATACTGAACGTGGACAACAATACACTGGAAACACCATTTGATGATCTTCAAAGCCTTCCTAACGATGTGTTGGCAACACTAAAGAATCGACTCAAGAAAGTTTCAACAACCACTGGGGACGGCGTAGCTCGTGCATTTTTGAAGACTCAAGCTGCCCTCTTTGGTAGCTACAGAGATGCTCTGAAGATCGAACCTGAGGAGCCCATCACGTTCAATGAAGATGTATTTGTCTCCCACCGCTCGAGTGCCATGAGACATTTCCTGCAGAATGCCATTCAACTGCAGCTCTTCAAACAGTTCATTGATGGTCGACTGGATCTGCTGAATTCTGGAGAAGGATTCAGTGATATTTTTGAGGAGGAGATAAACAATGGTGAATATGCAGGAGGAAGCAACAAATCCTATCATCAGTGGCTCTTCACAGTGAAGAAAGGAAGTGGGGCCATCATCAATACAATGAAGACGAAGGCAAACCCAGCAATGAAGACTGTATACAAGTTTGCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAATCGTTTGAAGCAAAAGGAGATGGCAGAAAATGGCTACTCAGTGGCTGGAGACAGTGTCCCGCACAAAGGTATCGCGGCGTCCCCTCTGTCTGAGAAGAAGGAAGGGAGGCAACGGGATGACCGGCGCCCAATAACCATGCACTTTGGCCAGGCACGACCTCCAAGACCACCAGTTAAGAAACCAAGAAGTAATGTATTGCCGACAGAGACTCGAATATCCTCCATTTCAAGTCCAGAGCACATCGTAAGGCCCACACGGCACTACACAGTGTTCCTTTCTGAGGAATCCTCTGATGATGAACTTCACCATGAAGAGAACTCTATATCTGCCTTCTCTGAAAGCTTTCTCTTCACTCCTTTTGAATGGCCTCAACCCTATAAAACGTTAAAGGAATCCGATACAGCAGATGGCGATGCTTTGAGTACAGAGAAGAGGCAAGGACACAACATCTTTCCCAGCTTGCCGGTACCAACCATGGATGTGAATTTACTGGACGACCTTTTCAGTAGTATTAAGATAACTTCGCAACATCAGCCGCTCAGCCAAGCCAAGAGTATGGAAGATCTGAGGACACCTAAAGAGGAAGAAATTGAGAATCCGTTTGCAAATCAGTGGAAAGGGATGGCATCATCTGAGAAGAACAAAGCAGTGTCGACGGGGCTGCATCACACGCTGCCTCACACCAAGCTGCGGAGCACGGGCCACGATGACATGTCTCTGGACGTGAAGCCCATCACCAGCTCATCGCCTGGAAGCATTCACTTTGGTGGCTTCTTCACGTCCGTCGACGGCGAGTATTCAGACGCTCCCGGGAGTGGTTCGGGCAACATCACGATTCCCCGGCCCCAAGGCAAGAAGTCGTCGGAGAAGGGAATCGGGCTGCCCCCTCCAGCGGCCATCAGCCGGGTAATCAAGCAGCAGGCTTTTCCCGGCCTGGATCAGGCCTCGACGGCGCTGCAGGACGGCGGCAAGGAAGACGGGCCCGGGCCCAGTGCTAGCTCGTTGTCAGACATGTTGCAAGAGTCCGCTGGAGCTGAGAAGAAACCCCCAGCATCAGACTTAACACCAGCATTAAACCGGTCACCTCAGCCTCCACTGAGTTCATGTGCTGCTGATATTCTAAAACCGATCAAAGTCAGTCAAGGAGTGGATAGCAGGAACGATCTCCTGAGTCTTTTGGATCCACTCAGCACCAGTTGCGACCATGACAGGGGTGCGTCCCCAGCTGCCAACCCATCCTTGGCACCCGCCTCATCCCTGCCTCCAGTTCCCGCTCCACTGGTGTTTGCTGCACCAGGGACTGACCTTGGTTTAAGTACACCACCCGCTTCCTTACAGTTCAGCCAGACCCTGGGGTACTCGGCCCCCAGCCCTGCAACCATGGCACAGTTTCCCCAACCGCCCTCCTACCCGTTTTCCCAAACCCTGCCCTCAGCCCTTCCCTTCCCTCAGACCCAGCCCCCCGCCCCACACTTTGCCTCTCCTGCAGCCTCTGCTTTTGTCCCGGGCTTCATGCCGTCAGCTCCGAGCTTTTTCCAACCACAGATGCCCCACAGGAACTACTCGGCTCCTTCCCTCCACCATTTGTACACTCAACCCAAGGCTCTGCCTCAATCAGGGACCTTCAGCAAGCAAAGCACAATCTCCTCGACAAGCCTGGGAGCCGCGAGCTACACGGCAACAGCCGCCAAAGCAGGTACAAATGTAGCTGATTCCAATCCAGCCGTGCCTAGCGCAGGGAAAAACTTGACCGAGCCACCTTTGGTCCCACCAAAGCCTTCCAAAGGTCCCGAAAGAATTTCCAAGCCCTCTGAGCCCAGCGTGGCCGGAGATCCCTTTGCAGCTTTGCTCAACACTACGAAGAAGGAAGCAGCAACGTCGCAGAGTAGAGTTGACCAGCTGAGGAAGAGGTGGGAGACGTTTGAGTAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02141	DENN	DENN (AEX-3) domain	Family	Interproscan
PF03455	dDENN	dDENN domain	Domain	Interproscan
PF03456	uDENN	uDENN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001194	Domain	cDENN domain	Interproscan
IPR005112	Domain	dDENN domain	Interproscan
IPR005113	Domain	uDENN domain	Interproscan
IPR037516	Domain	Tripartite DENN domain	Interproscan
IPR040032	Family	DENN domain-containing protein 1A/1B/1C	Interproscan
IPR043153	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13196	DENN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0030136	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0032456	Biological Process	endocytic recycling	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:1901981	Molecular Function	phosphatidylinositol phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-