Gene detail

Detailed information of XP_032897525.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032897525.1	ZINC FINGER PROTEIN	NC_045978.1	17594064	17653027	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032897525.1

ATGGAGCTGGAGGAGGAGAATGCGGTGCAGAGCAGCAGTGATGCTGCTCCCTTGGGCCAGGAAGAGCCCTCTGAGAGTGGCATGATAGTGGAGACATCCGAGGCTGTATCTGCAGACAGCAGTGACACAGTAACCACACTCAGCATGGGATCTGAGGCAGACAATAGTTCAGGCGTTGATTCTGGCGTCGGCCAGAGCTCTGAAGAATCCATGGAGGTAGTTCCTGAAACAAGTTCCAGCACAGATGTCATCACTATTGCTCACCTACCAGATTCCTCCTCTGTTGCTCAGTCCACTATTGTGTCCAGCGTCTCCACAGTTACACAGTCCATCATGGTGTCTGAATCTGCCCAAGTGCTGGTCCACTCTAGTGTTGCACCGGATGGAACCATGATCGTGTCTGATTCGACTGCATCAACATCATCTGATCTTGGGTCAGCCATCGATAAAATCATTGGTCCCGAGGCCATGCAAAGTTGCATCGCTGTAACAAGTGCAGGAGATGGATCTGAAGCCACTCAGTATCTTGTACTGCCGGGTCCTGATGATGGTGGTACTATTGATTCTCAAATGTCTACCTCTGAGCTGTCCAGCTCTAGGCTTTCCAACACGTCAGGGGATGGGTTGGCAGAAGGACCAACATCTACTTGCGCAGATCATCTTGAACAGCATGACCTGGCCAATCTAGAAGACATGATGGAAGTGGTAGTTGTGCAGCAGTTCAAATGCAAGATGTGCCCTTACAAAAGCATTTCAAAGGACAATCTTATCAATCACATGAAGGAGCGACATCTCAACATTGGAGGTTTTCTGTGTAAAAAGCGAGGGAGAGGACGGCCAAGGAAGCAGAATGCCTCACCGAGACCAGAGGAAATGAAAACTCAAGAGGACAAGGAACTAGAGCAAGAAGAGGAGGAGGATGATATTGTGGATGCTGGTGCTATTGATGACCGAGAAGCCGACAGCGATTATAATCCAGCGGAGGATGAGACGCGTGGGAGACAACCGAACTACAGTCGCAATGTCACCACTTCATCCAGTGACCGGCCTCGCAGGCGCCCAGGGAGGCCTCGTAAGGTTTTGCAAACAGAAGCAGCATCTGGGTTTGATGGAGCAGAGGTTGAGGCACTTGTCACTTCGCAGTCCAACCTAATGGATCTCCAGACCTCTGAAGCAGCCAGTTCAACTGCCCATGAGAATGGCGATGTGTCGGCAGCCAGTGAGGTTGTAGCAGAGTCTGGAATCAGCCAGTCCGATTCGGAGAACAAAGATCCATCATCAAACACCAGCGAGCCATCTTATAAACATTTGAGAAGACGAGGTCGTCCACCTAAAAGGTTCGGCAGGAGGAAATACAGAGGATACCTGGGCCGCAGATACAATTACTATAGATCAAACAAACCCCTGATGAGGCCCCACCATTGTCGGATCTGTGGCTCTCGCTTCCTGACCCAAGAAGATTTGAGATTTCACATAGATTCACATGAAGGGAATGATCCAGAACGGTTCAAGTGCCTGCAGTGCAGTTATCGTTGTAAACGGTGGTCATCACTCAAGGAGCACATGTTTAATCATGTTGGAACAAAGCCATATAAATGTGAGGAATGTGATTATACAAGTGTTTACAAAAAGGATGTTCTCAGGCACTCATCAATACACACAAAAGAACGAAAGAAGAAAGCTGACCTGGTGCCCAAGGTGAATTCCTATCCTTGTCCTGTTTGCTATCGTGTCTATCCCATGCAGAAGAGACTAACACAGCACTTGAAAACGCACAGTGCTGAAAAGCCACATATGTGTGATAAGTGTGGGAAATCATTTAAAAAGCGATACACATTCAAAATGCATCTACTAACCCACATTCAGTCTGTTGGGAACAGCAGATTTAAATGTGAATTTTGTGACTACATCTGTGAAAACAAGAAGCTTCTCCTCAACCACCAGCTTTCACATACCACAGATAAACCATTTAAATGTGATTTCTGCAAGTATTCCACTATCAAAGAAGATTTCCTAGTTTCTCATATTGCCATTAAACATACAGGTGAGAAGCCATTTTCCTGTGATCTCTGCCATTTCAACACAAAGCACAAGAAGAACCTGCGACTCCATGTCCAATGTCGTCACCCGGAATATTATGATAATTGGGCAAAGATCCATCCTGAGGAGCCACCACGAAGGCGAAGGCCGTTCTTCACTCTGCAGCAAATCGAAGAGTTGAAACAACAACATGAGCAGATGCAGTCTACACAGGAAAGCATACGGGATACTATTATGCCTCTGACGTACCACACTGTTCCAACATCAATAGTCAATCAGGATTCCTTGGGAACTGCCACTATCATTTATGAACGAGGTACAAGTGAATCGTCGGAGATCGCAGCACAAAATGCCTTGGATCTCCTGCTGAACATGAGCACGCCAAGGGAGCTGGTTACAAATTCATTACAGGTAGCAGTACTAAAGTCGGACAGTACAGTCCAAGACCAGCAAGAAGAAGCTCAAGACCATGAGGAGGAGCAGTTAACCATGTCGCCCCAACACAAAATTGTTGCACTTCATGTGGGTGAACATGGCGAGACTGTGGTCCAAGAGATGTATGAAACTACCACCATCGATAGCTGTGGAATCCCCCAAGTCACCATAAGCCCTTTCACCAATGGCACGGAATATAATATTGTCACACCAGGAAGTGAGGAGGTGCAGCACACCACCACAGTTTACAGTGGCTCCAGTGGCAGTGGGGATGTGGCTCACACGGTGTTAGTCAGCGGTGATGAGTTAAAGCAACACCAGAGTCGCTTTATCATGTCAACAAACTTGCAGGGGAACCAATTTCAACAGATTGAGTTTGCAGGTGACATTTCATCTCCGCCAGTTGATTCAAGCCTTCAGTCATCCATGAAGAAGTTCTCCTGCAAAATATGCACGGCATCGTTTCATGGGCGCGCAGAGATGGAGAGTCACAAGAGAGCACATGCCGGTGAACATGGCTTCAAATGTCTTGATTGTAACTTTGCAGCTAACACGTGGCCAGAGGTTCGAGATCATATGTTGCAGCATTCCAACTTGCGACCTCACAAATGTAACCAGTGTAGTTTTGCATCCAAGAACAAGAAGGATCTACGGCGGCATCTGCTCACACATACAAATGAGAAGCCTTTTGCCTGTGATATCTGTGGACAGAGGTTTAATCGAAATGGCCACCTGAAGTTTCACATTGAGCGACTGCATAGTTCTGACTCCCATCAGAAGAAGCCTCGTCAGCAACATGTCATACTGAATAGTGATGATGAAACAATTGCTCTACAAACTGATGATGCTGTCATTTCATCAGATCGATTCCAGGCATTGGCCCAGGACCACATCATTGTTGCCCAAGAACAGGCAATTTCTGACCAGGATGAGACCACATACTTCCAACATATAACATCCAATGGGCAGACTGTTCAACATTTGGTAACAGGAGATAACCAGGTGCAATACATAATTTCACAGGAAGGTGTACAGCACCTTGTTCCACAGGAATATGTGGTTGTCCCTGATGGTCACCATATTCAGGTTCAAGATGGTCAAATCCACCACATACAATATGAATCGGATCCACAAATACACCAGGTCTTGGAGGGACAGCAGATTGCAGTGAGTCATGATGGGCAGATCCAATATGTGCCAATCACTGACCGACAGGTAGTGACTCAAGCAGAGTTGGAGGCAGCTGCACACTCAGCAGTGACAGCTGTAGCAGATGCTGCCATGGCCCAGGTTCAAGGGATCTACACGACTGAAGCCACAGAGGAACAGATCCAGCAGCTTCAGCAGCAAGCAATCCAGTACGAGATGGCTCATGCGGAAGTCATCACATATTCAGAAGACTAA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13909	zf-H2C2_5	C2H2-type zinc-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR017956	Conserved_site	AT hook, DNA-binding motif	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050688	Family	Zinc finger and ubiquitin peptidase domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24403	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007420	Biological Process	brain development	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050769	Biological Process	positive regulation of neurogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-