Gene detail

Detailed information of XP_032895920.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032895920.1	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	NC_045976.1	34591916	34610471	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032895920.1

ATGCGATCAAAATACTTTGCAATGGATTGTACGTTGAGAAAGATGCTGTTGTCATTGTTGCTGTTCCCTAGCTTGGCTGAAGGGTCTTTCTCTCGATCCTATGGGATGTTGAATAGAGACATCCTGCTGCCCAGCGCCTTCCATGCTTCATCCAACTTCAATCTGAAAAATCTCATCATCACATGGCAGCGGACAGACAGTCTCGCCGTGGTTTACAGTTTCTATTCTGGAACAATCCATCCGGAGTATCACGACAAAGCATTCCTGGGCCGCACTCAACTATTTATCACCGAATTCTGCAAAGGGAATGCGAGCCTGAAATTGGAAAGAATGGTGTTATCGGATGTGGGAAGCTACACTTGTTTTGTAACTGTAGATGATGGAATGCCACACATTGAGAACGTGGTGGAACTAAAATTAAATGATATATCGGAGAATAATACATCCGGTGGCCCCGATCCAGCTTCAGAAAGGAAAAAGCTTGTACTCGTAGTTCCATTGCTACTTGTCATTTTAATTGCAGTTGGAATTTTGTTTTGGAAAGTGAAAAACAAGAAGAAACCTGATATTGAAGAGATGATTCATTTACTGGAAGACAATATAAAAGATGTCATTCAGAACTATAAAGAGTACATCTTGAAAGATAAAATGCATTTATGTTGTTCATTATCACAACGGCGATTCGCAAACTATTCGCTTGCCAGAACCATCAACGTTACCAACCCGAAGGAACAAGACCTAGATGGTGATCTTATCAGGAGCGATGACTCAAATAATTCACAAGAAGTACAAATTTCACAACTGCTGACTTTGCTTCGGGAAGAAAACTTCTCAAAGCGAGTCCTGCTGGTAGGTGATGCAGGAGTAGGGAAGAGTTGGACTGTTGTCAGCATGGAGCAAGAGTGGGCATCTCAACCAACCCACCTCTTGAGGTGCATCTTTGTTCTCAGATTCCGTGACTTGAATGAGGTTAAAGGAAAAACATCTCTCCGGGATCTGCTGAAGAAGCATTGCACACCTTTGTCATCAGTCCTAACCGAACTCCTCTCGAACCCTCAAGATGTGTTGATCATTTTGGACGGGCTGGATGAATTCGCCCATCAGTTGCAATGGAATCCTTCAGGCTGTGATTTCAACCTGGATAGTGAGGCTGAAGTAGGTGTTCTTGTTTCCAAACTAATATCCAAGAACCTCCTTCGAGAAGCCCAGGTGTTGGTTACCTCCCGGTGGAATACCAAGCAGATAGAATTTAACAAGAAGTACTTTGATCAGCTTTTTGTTATCTCTGGCTTTACCAATGATCAGCTGAAAAAATATTGTGAGGTGTTTTGTGGAGAGCAGCAAAAGGCGGAAGAAATGTTTCAACGCATTACAGAAAATGCGACCATCAAATGTCTGGCTTCCAATCCCCTCAACAGCTTCATTCTGTGCAATATTTTGGACAAGTGTACCAGCTCTCAACGAGTGACTGCAAATGAACCAGTGACAAATAGCAAAGTGTTTACATTGTTGCTGTACAGTCTGTTTAACTGCAGCACGAGTACAGAAACAGACGCTGAGAATAAGAGTGAAGAGGAGAAGAAATTGTTTAAAGACACCATCCTGAAACTGGGAGAACTATCCTTCAACTCTCTGCTATCAGGGAAACTTAAAATAAATGTGACTGATCTGAAGACCTATGGAATAGACCCAGACATCCTTTCAAAATATCTCTCAAATCTTGTGCTGGAATGTAAATGCCAAGGAGTCTTTGAGTTCCACCATGCAGTGCTGAAGGAACAATTTGCAGCTTTATATTGCGCTACTTTACTCAACAATGAAGCTGAAGAGTTGGTCAAGTGTCTGGATCTGTGGTGCTTTGGGAAAAGGCCACTAAATCAAATGAGCCAATTTTATTTGCAATCTTTTCAACCTGACCACACAGAGAAACTGTACCATTTTCTGAGGTTTCTCACTGGCTTCTTAACCGCAGGAAGAGATGGCAAGTTGTGGAACTATACAACTCCTCTCCCCCCTTCTACAGCCAGAGCTCTCACAACATGGTTCAAAAACAGCCTTCAGCGAGACATTAAGAAGGCAGAATTGCTGAATTTGATGCATTGTCTCTTTGAACTGAATGATGCCACTGTAACGGCAGAAGTATCTCCTTGCATCCAACATGTGGATTTTCACAACGTTTCTCTGAGCCCACTCGATCTGCGTGCTTTGTGCTACTGTCTCAATCATTCCACCGTGGAGGAGATGGATTTGAGGCTCTGTAGCATTGGTGATAAAGGAATAAAGCAGCTCCAAGAAATACTAGTCAAGTGCAGAACTCTTTTGGTTAGCTCCAACAAACTGACTGTAAAGTCAGCAAAGAGTTTGAGTGCCGTCCTTGAAGACCCAAAGTGCAGGATTGAGACATTATCGTGTGGTACAAACTCTTTTGGTTCGGCGGGAGCTCAGATTCTGTGGAAAGCTCTGGCACGAAACAGAAGTCTCAAAATCCTTCGCCTGTATGACAATGGGATCACAGTTGAAGGCACAGAGAACATGACTCAGTACCTGACATGCAACAATACTCTCCAGAAACTCTTTTTATGTGCAAACAAACTTGATGACGTTGAACAGAAAAACATTCAACAAGCCGAAAAGCTGTGTCACGGGCTAAAGATCATCACTAAAATCAGAGACGATGAAGAGCTCTTACTCCGAGTTGAAAGTCATGTTCAAATGCTTCCCTCCCTTGAGCAGAGTTACGCCACAGAGTGGCTGTGCAAACTATTGAAATCCATTCTGAAAGACCTGGGAGATGAGAGTACCATACCTGATGTAGACACCCGGGTAAGGATAGGAAAGATAAAAGCAAATATTAACAAATATCTTCAGATGAACAAAGTCACCATGATTGATGTTCCAGACAAGGAGAATGTGTTGCAGCTCCATACCCCTGCACCACTTCCTCGAAACAACTTCCTTAAACGTTTCTTTTCTACGTCACGGTGGCGCAGCGGTAGAGTTGCTGCCTTACAGCGAATGTATCACCGGAGAACCGGGTTCTGTCTACACGGAGTTTGTACGTTCTCCCCGTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729	NACHT	NACHT domain	Domain	Interproscan
PF17776	NLRC4_HD2	NLRC4 helical domain HD2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR041267	Domain	NACHT, LRR and PYD domains-containing protein, helical domain HD2	Interproscan
IPR050637	Family	NLRP family, innate immunity and inflammation regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45690	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0050727	Biological Process	regulation of inflammatory response	Interproscan
GO:0050729	Biological Process	positive regulation of inflammatory response	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-