Gene detail

Detailed information of XP_032894730.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032894730.1	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	NC_045975.1	13121308	13227525	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032894730.1

ATGGTGCCCAGTGAAGAGAACCAGCTGCTACCCCGGGAGGGGATGTTTTGGAGTTGCAGACAAAGTATCTTTGATGAAATGAAGAAGAAATTCTCTCAGTCAGAGACGGCAGCGGATGAACCACGGGTGCTGTGTATCATACAGGACACCACTAATGCCAAGGTGGTCACTCAGCGGCTCACTCTTAACCTTCCTGCATCAACTCCACTCAAACAGCTGTTCGAGGACGTCTCGGCTAAAGCAGGCTACATCAATGCCACCTTCGAGTTAGTCTGGAGTAATGGTCTGAACAACCCTGACCAGGGCCCCCTGGATTACACCAGTGAAAAATCTCTCACTGAATCTGGATTTGAACCAGGAAAGAAAAACTTCCTTCAACTTACAGATAAAGATGGAGAGCAGCCCCAATTTGCATCGGATGAATCTGGTACAGCAGAAAGCAGTGGACAGGAGGACAGCACGCAGAAGAGGATCATTGGCCCTCAGCTGAGGGAAAGCTCTGTGGGCTGTGGAGATTACAGTAATCACAGCTACTCGTACTCTCCCATCCTGGGGAAGTCAGAAACCGGATATGTGGGATTGGTAAATCAAGCCATGACCTGCTATCTGAACAGCTTGCTGCAGACGCTCTTCATGACTCCAGAGTTTAGGAATGCACTATACAGGTGGGAGTTTGAAGAATGTGAGGAAGATCCGGTGACCAACATTCCGTACCAACTCCAAAGACTCTTTGTTTTGTTGCAAACGAGTAAAAAAAGAGCAGTGGAAACAACAGATGTGACCCGGAGCTTTGGTTGGGATAGCAGTGAAGCCTGGCAGCAGCATGACGTTCAAGAACTGTGCAGAGTCATGTTTGATGCACTCGAGCAAAAATGGAAGCAAACGGAACAGGCTGACCTCATTAACCAGCTGTACCAAGGAAAATTGAAGGATTACGTCAGGTGTCTTGAGTGTTGCTACGAGAGCTGGAGAATCGATACGTACCTCGATATCCCACTGGTGATCAGACCTTATGGTTCTAGCCTGGCGTTTAACAGTGTGGAAGAAGCTTTGCAAGCATTTGTCCAGCCTGAGACTCTGCATGGACCCAACCAATATTTCTGTGAACGCTGCAAGAAAAAATGTGATGCACGCAAGGGACTGAAGTTCCTGCATTTCCCATACCTACTGACACTGCAACTTAAGCGGTTTGATTTTGACTACACCACCATGCACCGAATAAAGCTGAATGATCGGATGACGTTTCCTGCCGAGCTGGACATGAGTCCTTTCATGGATGTGGAAGATGAAAAATCTCCTCAGACCGAGAGCTGCACGGACAGCGGTGCTGAAAATGAAGGGAGCTGTCACAGTGACCAGTTGAGCAATGACTTCTCAAACGATGATGTTGTGGATGAAGGGATCTGCCTGGACAGCAACAGTACCAGTGATAAGACATCAAAGGCAGGGAACGTAAAGAATGGTTGGATCTACGAACTCTTCTCGGTAATGGTTCATTCAGGGAGCGCTGCTGGTGGACATTACTACGCCTGTATAAAATCTTTCGGTGACGGACAGTGGTATAGTTTCAATGATCAACATGTGAGCAGGATTACTCAAGATGATATTCGGAAAACCTACGGCGGCTCTCCAGTGGCCAGAGGCTATTACTCCAGTGCCTTTGCTAGCTCAACCAACGCGTACATGTTAATTTACAGACAAAAGGAGTCGACGAAGAATGCAAAGTTCTTGGAGGTGCATGATTTTCCAAAGCATATTCATCACCTGGTCCAAAAGGAGAAGGAATCAGAAGAGCAAGAAAAAAGGCAGAAAGAAATTGAACGCAATACATGCAAGATCAAGATTTTCTGCATTCACCCCATGAGACAGACAATGATGGAGAACAAACTGGAGGTCCACAAGGACAAAACGTTACGGGAAGCTGTGGAGATAGCGTACAAGCTGATGGAACTAGAAGGTGTGCTTCCGCTCGACTGCTGCCGGCTGGTCAAGTACGACGAATTTCACGATTACCTGGAGCGTTCATACGAGGGAGAAGAGGAGACCCCCATGGGGATGCTGCTGGGTGGAGTCAAGTCATCGTACATGTTTGACTTGCTGCTGGAGACGAGGCGACAGGAGCAGAACTTTCAACCATACAAGTCGGGAGAAGTGATGGTGAAGGTGCACGTGGTTGACCTGAAGACAGAAACCCTGGCTCCACCCGTCAATGTTCGGGCCTACCTCAACCAAACTGTGGCCGAGTTCAAACAGATCATTTCCCAGGCAACAGGACTCTCTGCTGAACACATGCGCATCGTACTGGAGCGCTGTTGCAATGATCTGCGGCTGCTCCATGTGCCCAGCAAAACACTGAAGGCTGAAGGATTCTTCAGGAGTAACAAGATATTTGTTGAAAGCTTGGACATGCAGGATAATCAGGCACCGTTCACCGAATCACAGCTCTGGCATCTACTGGACCAGCATGCCAACACCATTCGGCTTTACGTGTCGTTGCCAGAACAATCACCAGGGTCCCAAGGGCTGCATCAAAAAGCTGCCGGAGACCCAGTCAATCAAGAAGGCAGCTGTGAGTCTGCAGGAACGTCTTCTGCTTGCAGGAAGCCCGTGGAAGCCATTTTGGAGGAGAGCACAGAGAGACTGAAGAACCTTTCACTGTTGCAGCACCAGCAACAGTTGTCCTGCACTTTGGGAGGGAATGGTGATGGGATGAAAAGTGCTGAAGGCAGTGACTTTGAGACCATCGAGTCCCCGTCGCAAGAGACTGAATTGTCGGCCTCTGTGGACAACAGGGAATTGGAAAACCGGATTCCCTCCTCCGATGCCGAGGTCCCGCTGCAGTCTGAGGAGAGGTCCGACTCGGACGTAAACAACGACAGGAGCACCAGCTCCGTGGATAGCGATATCCTCAGCTCCAGCCACAGCAGCGACACTTTGTGCAACGCAGACACGGCCCCCGTTTCCCTGAGCAACGGCCTGGACTCTCACAGCATCACGTACAGCCGCCGCTCGAAGGCTAGCGAAGGGAAGAAGGAGACCTGGGACACGGCGGAGGAGGACTCGGGAACGGACAGCGAGTACGACGAGAATGGGAAGTGCCGAGGATTAGCGCGGTACATTTACTTCAGAGCAGAGCACTTCACATCTGAAGATGGATCAGATTTGTTGGTGTTTGTTGACAAGCGTATCACACTGGCTGCATTCAAGCAACAGTTAGAACCGTACATTGGAGTTCCATCATCCCAGTTTAAGATATTCCGAGTCTATGCTAATAGCCAGGAGTTTGAAAGTGTCCGATTAAATGAAACACTTTCGTCATTCTCCGACGACAACAAGATAACCATTCGACTTGGGCGAGCTCTACGGAAAGGAGAATATCGTGTTAAAGTGTTCCAACTCCTGGTGAATGAACCGGAGCCTTGTAAATTTCTCCTCGATGCTGTGTTTGCTAAAGGCATGACAGTGCGTCAGTCAAAGGAGGAGCTGCTGCCCCAGCTGAGAGAGCAATGTGGGCTGGATCTCAGCATAGACAGGTTTAGACTGAGGAAGAAAACCTGGAAGAATCCTGGAACAATCTTTCTGGACTATCACGTCTATGAGAACGACATCAACATCTCCAGCAACTGGGAAGTTTTCCTTGAAGCACTTAATGAAGCTGAGAAGATGAAATCCCTGTCCCAGCTGGCAGTGCTGACCAGACGATGGAAGCCGTCGCAGATGAAGCTCGACCCTTTCCAAGAGGTTGTCCTGGAAAGCAGCAGCGTTGAGGAGCTGAAGGAGAAGTTACACGCAATAAGTGAGATTCCCATGGAAAATATAGAATTTGCCAAGGGCAGGGGAACATTTCCCTGTGACATTTCAGTGCTGGAGGTTCACCAGGATTTGGACTGGAATCCCAAAGTGACGACCCTGAATGTCTGGCCACTTTACATCTGTGACGACGGAGCAGTCATCTTCTACAGGGACAAGACGGAGCAGCTGATGGACCTGACAGAAGAGCAACGCAGCGGGCTACTGAAGAAAGAGAGCAGCCGCCTGCAGAAGTTGGGCCACCGGGTCAACTACTCTCCCCGCAAGGAGAAAGCACTGAAGATCTATTTGGACAGCGGCCCCAGTAAAGACTCCAGCCAGGACTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF14560	Ubiquitin_2	Ubiquitin-like domain	Domain	Interproscan
PF19718	USP47_C	Ubiquitin carboxyl-terminal hydrolase 47 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR045578	Domain	Ubiquitin carboxyl-terminal hydrolase 47, C-terminal	Interproscan
IPR050164	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-