Gene detail

Detailed information of XP_032894386.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032894386.1	FI18025P1	NC_045975.1	41706259	42132230	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032894386.1

ATGCCGTCAAGTTGTGAAGTGCTGGAAGCCACGGCAGTCTCGAGTAGGCAAGGAGAGTGGAAGAACGACCATTCTGTCAGAATGTCTTCCAAGCAAGCTGCCTCTCCGTATGGTTCATCTGCTGATGGGGAGGAAGCCATGGTCCAGGATCGACTAGTACGGGAGAGGGAGAGGGAGGAACTGAACGACCAGCACTCGGCCTCACACCTGCCCCTGCACACGATAGTGATCAATAAACCACCGCCCGAGGAGCATACGCCCATGGGCGGCAGCCTGCAATCCGACAACGACTGGGACAGGATGTCCAGCACTCAGCACCGAGCAGATAGTGACAACAACAAGGTCTGTTCCTTGTACTCCTTCCGCAATGCAACTACCTCACCACACAAGCCAGATGAAGGAGGCCGAGATCGCAGTGACGTGATCTCTGGGGCAGCGTTTGGAACGCCCGAACGGCGCAAAGGAAGCTTAGCTGACGTAGTGGACACTCTCAAGCAGAAGAAGCTGGAGGAGATGACAAAGACCGAGCAAGACGAATCATCTTGTGTCGAGAAGTTTCTCTCGAAGGACTGGAAAGAGAAGATGGCCGGACTCAATACAGGGGAGATTCTTGGCGAGATCAAAGGTACACCGGAGAGCCTTGCGGAGAAGGAGCGCCAGCTGTCCGCCATGATCAACCAGTTAATCAGCCTCCGGGAGCAGCTCCTGGCCGCACACGATGAGCAGAAGAAATTAGCAGCATCGCAGATCGAGAAACAACGGCAGCAAATGGAGCTTGCCCGCCAGCAACAGGAGCAGATTGCAAGACAACAGCAGCAACTTTTGCAGCAACAGCACAAAATCAACCTCCTCCAACAGCAAATCCAGGTTCAAGGTCACATGCCTCCGCTCATGATCCCGATTTTTCCACACGACCAGCGGACGCTGGCAGCACAACAGGGATTCCTCTTTCCACCGGGAATAACATACAAACCAGGTGATAGCTACCCTGTGCAGCTCATTCCGTCGACAATGGCAGCTGCTGCTGCATCTGGCCTCAGCCCACTACAGCTCCAGCAGCTGTACGCAGCACAACTGGCAAGTATGCAGGTCTCTCCTGGTGCTAAGATCCCGTCCACCCAACAGCCCACAACTCCGGCCGGTACCCTCTCTCCAACGCCTCTGAAGAGTGAAAAGCATGGAAGCAGCCCTGTGCCTCAAATTAAGGATGAAGGCGCTCAGCCACTGAATCTGTCAGCCCGGCCCAAGACATCTGGTTCGGTGCGATCTCCCACATCACCCACACAAAGCTTCTTCCACACAAACAAGTCTAGTCCCATCAACATGCCCAACAAAAGCATCATCCCCAGCCCAGTGGCTGGTGCTCCCGGGAGAGGATCCTCTTTAGACATCCTGTCCACTCTGAATTCGACAGCCTTTCTGGGTGACCAGGATGCAGTGATGAAAGCCATACAGGAAGCTCGGAAGATGCGAGAACAACTACAACGCGAGCAGCAGCTGCAGCAGTCTGGGATCGATGGCAAGATCCCGTCCATGAACAACCTCGGAATGAACTGCACGGGTAACAAGGAACGGGTGCCCTTTGAGAATCTTGCACAGCAGCTGACAGGAAAGACAGGTGAAGAGGTGAAGGTTGGTCCAGGTGTCATTGACCTGACAAGGCCAGAAGATGCAGAAGGGAGTACTACAGTACCGGAGGCTCGGGTCTACAGAGAAACCAGAGGCCGCAGCAACAACGAACCGCACATCAAACGGCCAATGAACGCCTTCATGGTGTGGGCGAAGGATGAGCGCAGGAAAATACTGCAAGCCTTTCCAGACATGCACAACTCAAACATCAGCAAGATATTGGGATCTCGCTGGAAGTCCATGTCCAACCAAGAGAAGCAGCCGTATTACGAGGAGCAAGCGAGACTCAGTAAGATGCATCTGGAGAAATATCCCAACTACAAGTACAAGCCCAGACCCAAGCGCACATGCATTGTGGACGGCAAGAAGCTGCGCATTGGTGAATACAAGCAACTGATGAGGAATCGCAGGCAGGAGATGAGACAGTTCTTCACCGTAGGGCAGCAGCCCCAGATCCCCATCACCACGGCGGCAGGTGTGGTCTACCCCAGCGCCATCTCCATGGCGGCGCCCGCCGCTTCGCCGCAGCTGACATCCGAGTATTCCAGTGAGTCCGGCAGCCCCGAGCCCAGCATTGCCGTCATCCAGAGCACTTACAGCATGAAGACGGAGAGCAGCAACCTGCCCACCAGCGAGATGACTAACGGCGAGGAGGAGGTGGAGATGTACGAGGACTTTGAGGATGATCAGAAATCAGACTATAGCAGTGACAATGAGAATCAGGAGGCCATCAGTGCCAACTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR051356	Family	SOX/SOX-like transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45789	FI18025P1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007417	Biological Process	central nervous system development	Interproscan
GO:0032332	Biological Process	positive regulation of chondrocyte differentiation	Interproscan
GO:0045165	Biological Process	cell fate commitment	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-