Detailed information of XP_032893706.1 in Amblyraja radiata Gene info
Gene IDAnnotationChromosomeStartEndStrand
XP_032893706.1LYSINE-SPECIFIC DEMETHYLASENC_045974.11819051818311138+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors FamilyARID
Ubiquitin FamilyE3|E3 activity RING|PHD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628PHDPHD-fingerDomainInterproscan
PF01388ARIDARID/BRIGHT DNA binding domainDomainInterproscan
PF02373JmjCJmjC domain, hydroxylaseDomainInterproscan
PF02375JmjNjmjN domainFamilyInterproscan
PF02928zf-C5HC2C5HC2 zinc fingerDomainInterproscan
PF08429PLU-1PLU-1-like proteinFamilyInterproscan
PF21323KDM5_C-helLysine-specific demethylase 5, C-terminal helical domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001606DomainARID DNA-binding domainInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR003347DomainJmjC domainInterproscan
IPR003349DomainJmjN domainInterproscan
IPR004198DomainZinc finger, C5HC2-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR013637DomainLysine-specific demethylase-like domainInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR036431Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR047970DomainLysine-specific demethylase 5A, second PHD fingerInterproscan
IPR047972DomainLysine-specific demethylase 5A, third PHD-fingerInterproscan
IPR048615DomainLysine-specific demethylase 5, C-terminal helical domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10694LYSINE-SPECIFIC DEMETHYLASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000785Cellular ComponentchromatinInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0032452Molecular Functionhistone demethylase activityInterproscan
GO:0034647Molecular Functionhistone H3K4me/H3K4me2/H3K4me3 demethylase activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

TOP