Gene detail

Detailed information of XP_032893368.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032893368.1	KRUEPPEL-LIKE TRANSCRIPTION FACTOR	NC_045974.1	3759711	3783836	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032893368.1

ATGAATGACATCAACCTGAGTCAGGTGGGCATGGAGCAGCTGAGTGCTTCGTCCGTCAGCTTACCTGTGACAGCAACTCACCTGGGCATGAGCTCACCCACTCACAACCCTCTCTCAGCTCCAGGAATGCCCGTAGCGATCCCGAACCTGAGCCCTACCTTGGGCACTCTCCCCTCCGCCCTCTCGTTGATGCTTCCGATGAGCATCGGGGAACGTGGCGTCATGTGCAGCATTCCTGACCGCAACTACACGCTGCCCCCTCCTCCTTATCCACACCTGGACAACAGCTACTTCCGGCACATTTTGCCAGGCATTCTGTCTTACCTGGCTGACAGACCACCTCCCCAGTACATCCACCCCACGGCCATCAGTGTGGACGGCACTCCTGCACTGCCTGTCTCCAGCAACCCGCCTGCCCTGGATCACTATGAGCCCGGCAGCGGCGTCAGCTTGGAGACCAGCATCGTCTCGATAGACTCAAGACAGGTCGGCAGTCACGGCTCCCAGAGTCTGCACCAGCCCAGCAACGGAGAGGTGCCGCTGGATGCCAGCATCTCCATGGAAACGGTTTCCAGGGTGAACAGCCCCATCCCGACGGAAGGGATGAGCGACGAGATTGCGATATGCGGGGTGAGGGCAGAGTCCCGGACGCTGCCCCCTGGGTCCAGAGGCCACGAATCCATGAGCGTGGACTCGGTGCGGAATAACTTGGAAGCGGAGGGACAGAGCGGGGTGATGCCGATTCACGGCAGCCCTCTGGAGCTGCCGGTTGTGATGGAACCAGAGGCCATGGCCGGTCGGGTGGGCAGCATGTCGGAGAGGGCGCTGCGTGACCCCATCCACGCCGCTGCACTCAACCCTAACCCTGGGGTAGTGGCACTCCCTCCCCCCCACTCCCTGCCTTCCCTCCACGGACCGAGCCTGGGTCTGGACTCTGTCTCCGTCTCCACCATCACCGCAGACGTCTCCATGGCCTCCAACCAGGTCAACGTGTCGGCGGAAACCCTGACCTTTGTGGCGCCGGCTCTGCAGATGGACGACTCCGGCTCCAATAAGGAAAACCTGGCAGACTCTTTCACAATCTGGTGCACTCTGTGTGACCGGGCCTACCCCGAGGACTGCCCTGAACATGGGGCAGTGACTTTCATTCCCGACACCCCAGTCAACAGCCGAGCCAGGCTCTCGATTCCAAGGCAACTGTGTCTCCGCCAGTCCATCACAGGGGGCGATGTCGGCGTGTGGAGTCAAGATGCCATTCCCGTACGAACCTGCTTCGGACCTCTGGTTGGCCAGCAGATTAACCTGATGGAAATCACCGACTGGACGAGCAAAACCAGTACAAACATCTGGAAAATATTTCGCAATTACGTTCTGGAGTTTCAAATAGTGACAGTGGATGAGGACCTCTGCAACTGGATGATGTTTGTTCACAGAGCCAGGACTCGCGAGGAGCAGAACCTAGTGGCCTATCCTCACAATGGGAAGATTTATTTCTGTACGTCCAGGGAGGTTCCTCCTGACCACGAGCTGCTCTATTACTACACCAGGGATTATGCACGGCAACTCGGGGTTCCCGAGCAGCCGGACGTGCGCATGTGCCACTGCGGGAAAGCCTACGGCACGTACGGGGAGCTGAAGTTGCACCTGAACAGCCACGGGCAGAACCGGGAGAGGAAGTGGAAGTGCTCCATCTGCCCCCGAGCGTTCACCTCCTCCACCAAACTCAATGTCCACATGATGGGCCACATGGGCATGAAGCCTCACAAGTGCGAGTTCTGCAGCAAGGCCTTCAGTGACCCCAGCAACCTGCGCACTCACCTCAAGATCCACACAGGTCAGAAAAACTACCGCTGTGAAATGTGTGACAAATCGTTCACGCAGAAGGCTCACCTGGCTTCACACATGATCATCCACACGGGCGAGAAGAACCTGAAGTGTGATTATTGCGACAAGAAGTTCATGCGGCGACAGGATCTCCGGCAGCACGTGGTGACACACACACAAGAGCGACAGATCAAGTGTCCAAATTGTGACAAGCTCTTCTGGAGGACAACCCACCTGAAGAAACATTTGAATTCTCATGAAGGACGGAGGGATTTCATTTGCGAAAAGTGCTCAAAGGCATTCTTGACAAAGTATCATTTGACCCGTCACCTGAAGATCTGCAAAGCCTCCAAGACGTGCATGCCCACACAAGATCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAAGGGGACAGTGATGAGGAGTTGTTGGAGGTTGGCAGTGGGACATGTCGTTTAACCAATGACCATTACATCACAGAAGACAGTTCTCAGTAG

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF18445	zf_PR_Knuckle	PR zinc knuckle motif	Motif	Interproscan
PF21549	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214	Domain	SET domain	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR041493	Domain	PRDM4, zinc knuckle motif	Interproscan
IPR044404	Domain	PRDM4, PR/SET domain	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23235	KRUEPPEL-LIKE TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-