Gene detail

Detailed information of XP_032886044.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032886044.1	CYTOKINE RECEPTOR	NC_045967.1	6999558	7072000	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032886044.1

ATGTTCAGATGTATGGATTTTGAAGTCAGGTACCGGAATAACAAGGACAAGAAATGGCAGAAAGCTACTGTCATGGAAAAAACAAACTTCAATTTGGCAAGTGTGGATCCAGAGAAGCTCTACACCTTTCAAGTGAAAAGCAAGGTTAACAAATACTGCGGCATGACAAAATTGTGGAGTGAGTGGAGTCTCCCTGTTTACTGTCGGAGAAACAACATCCAACCAGATGTCAATTGCATTGTCTATAATGAGGAATTCATGGAGTGCACATGGACCCACAGTGAAGGGGACGTGAACTCCACCCTGTACCATTGGTATAGGAATGAACCACCACAGGAATGCAAGAGCTACATTCAACAACATGGCTACAACGTAGGATGCTATTTCTTAGCCAGTGAGATACAACTATTCAAAACATTTTACGTTTTCAGAAATGGCTCGGGAACTATTTCAGGAAAACCCCAAACGTTTCAGCTCCAGGACCAAGTCAAACCCTTTGCTCCTGAGAACCTGGTGGTGAATGCCGCGAAAAAGAACGGACTCATCCTGAGTTGGGTTTCCACGATGCCAAACCTCAATTGCGTGGAGTTTGAAGTCAGGTACCGGAATAACAAGGACAAGGAATGGCAGAAAGTTACTGTCATGGAAAAAACAAACTTCAATTTGGCAAGTGTGGATCCAGAGAAGCTCTACACCTTTCAAGTGAAAAGCAAGGTTAACATATACTGCGGCACGACAAAATTGTGGAGTGAGTGGAGTCTCCCTGGTTACTGGTGGAGAAACAACATCCAAACAGATGTCGATTGCATTGTCTATAATGAGGAATTCATGGAGTGCACATGGACCCACAGTGAAGGGGACGTGAACTACACCCTGTATCACTGGTATAGGAATGAACCACCACAGGAATGCAAGAGCTACATTCAACAACATGGCTACAACGTAGGATGCTATTTCTCATCCAGTGAGATACAACAATTCAAAAGATTTTACGTTTCCATAAATGGATCCAGTGGCTCAGGAACTATTTCAGGAGAACCCCAAAAGTTTCAGCTCCAGGACCAAGTCAAACCCTTTGCTCCTGAGAACCTGGTGGTGAATGCCACGAAAAAGAACGGGCTCAACCTGAGTTGGGTTTCCACGATGCCAAACCTCAATTGCGTGGAGTTTGAAGTCAGGTACCGGAATTACAAGGACAGGAAATGGCAGAAAGCCACTGTCATGCAACAAACAGACTTCAATTTGGTAAGTGTGGATCCAGAGAAGCTCTACACCTTTCAAGTGAAAAGCAAGATTAACAAATACTGCGGCACGACAAGATTGTGGAGTGAGTGGAGTCTCCCTCTTTACTGTCGGAGAAACGACATCCAACCAGATGTCGATTGCATTGTCTATAATGAGGAATTCATGGAGTGCACATGGACCCACAGTGAAGGGGACGTGAACTCCACCCTGTATCACTGGTATAACAAAAAACCACCACAGGAATGCAAGAGCTACATTCAACAACATGGCTACAACGTAGGATGCTATTTCTCAACCAGTGAGATACAACTATTCAAAAGCTTTTACGTTTTAAGAAATGGATCCAGTGGCTCAGGAGATATTTCAAGAGAACCCCAAAAGTTTCAGCTCCAGAACCAAGTGAAACCCTTTGCTCCTGGGAACCTGGTGGTGAATGCCACTGAGAACAATGGGCTTCTCCTGAGTTGGGACATCTCGACGCTACGAGTCCAGTGCCTGGATTTTGAAGTCAGGTACCGGAACATGGACAGGGAATGGCAGAAAGCTACTCTCTTGCGACAAACACACTTCAATTTGCCAAGTGTGGATCCAGAGAAGCTCTACACCTTTCAAGTGAAAAGCAAGGTTAACTTTTTCTGCGCCACGGCAAAATTGTGGAGTGAGTGGAGTCTCCCTGTTTACTGGGGGAAATCTAATACAGAAAATAACCAACGAGGTTTCAATCCATTGGCATTACTTGCTGCTGTGCCTGTTTTTGGTTTATTCATATTCATAATATACCTAACATATACAAGATACACCGCTTCCAGAAATCTTCGGCATGTTCAAATGAGAAATGAGTCTTATGAAGTGAAACACTCCCAGCTGAGGAGATTCCACAATGTGCATCACTTCAAGTGTCCAAAGGAAAGTGGATGCCAACATTAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09240	IL6Ra-bind	Interleukin-6 receptor alpha chain, binding	Domain	Interproscan
PF21604	CRLF2_D1	Cytokine receptor-like factor 2-like, D1 domain	Domain	Interproscan
PF21605	CRLF2-like_D2	Cytokine receptor-like factor 2-like, D2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003531	Conserved_site	Short hematopoietin receptor, family 1, conserved site	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015321	Domain	Type I cytokine receptor, cytokine-binding domain	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR048648	Domain	Cytokine receptor-like factor 2-like, D2 domain	Interproscan
IPR048651	Domain	Cytokine receptor-like factor 2-like, D1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23037	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004896	Molecular Function	cytokine receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0019221	Biological Process	cytokine-mediated signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-