Gene detail

Detailed information of XP_032881230.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032881230.1	HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26	NC_045963.1	20144652	20247814	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032881230.1

ATGCCTGACCATGACAGCATAGCCCTCCTAACCAGACATACTAAGAGAAGAAGAGTCGACATTGGAGTGAAGAGAACTGTAGGGACAACTACGGTGTTTACTAAAGCAAAAGGGAAGCTATATAGTGTCATGAATTCCCAAAGTTCAGATCAGGACATTGAGTGCTCAGTGGTTCAGCATACAGATGTGGACAAATCAAACGTGCTCCGCAAGCTGCTGAAGAGGGCAAACTCTTATGAAGATGCCATGATGCCTTTTCCTGGAGCTACCATAATTTCCCAGCTACTGAAAAACAATGCAACTAAGAACGGAAGCACAGAGCTCAATTTGCAAACCAGTGGTTTCTCCAGCACGGGGTCAGAGGCAAATCAGGAGGATGCTTGCAGCAACTCTTCAAGGGAAAGTGGCCAGGAATGCCTGTCACCATTTAGCAGGCCTAACATGAGTCAGTTCGACGTGGATCGGCTTTGTGATGAACATTTGCGGGCCAAACGTGCACGAGTTGAAAACATAATTCGAGGTATGAGTCATTCGCCGAACGTGGCACTGCGGGGTGGAGAGAATGATCGAGATGGGGTACAGCAGCCTGTGAGTCCCCGAGAAAGTTACAGGGAAAACAAACGCAAGCAGAAGCTCCCCCAGCAGCAGCAACAGAGTTTTCAGCAACTGGTTACAGCACGGAAAGAGCAAAAGCGAGAAGAACGACGGCAATTGAAGCAACAACTGGAAGACATGCAGAAGCAACTGCGTCAGCTCCAGGAAAAGTTCTACCAAATATATGACAGTACGGACTCTGAGAACGATGAGGATGGCAATCTTTCTGAAGATAGCTTGCAGTCTGAAACCACTGATACCAGAGCACGAGCCCGTTCCGACCATGAGATATCAGAGTTGGATCCAGGACACTTCCTTGATCGTGCTCGAGCTCTTATTAGGGAGCAGGAAATGGCGGCAGAAAATGAGAAACTGAAGAGAGATGGTCGCTCCAGGAAAAGCCAAGGCCTAACCACCTTGCATGCTGAAGGAAAACAGCTAGCTGAGACGCTCAAACAGGAACTCAATTCCACCATGTCACAAGTAGTGGACTCTGTCGTCAAAATGTTCTCTAAATCCTCCCACCAGCTTCCTCAGGTCTTCCCCCCTATCCAGATTCCACAGGCGAGATTTGCCATGAATGGAGAAAACCACAACTTCCACACAACAAATCAACGACTTCAATGCTTTGGCGACGTTATCATTTCGAACCCGTTGAATACTTTTGCCAACATGCACGTGTCTAATTCCTCGGACCAGACGGAAGCACTGCCTCTCGTAGTACGCAAAAACTCCTCCGAGCCATCTGCGTCCACCCCGTCCATGGGAGGCCACCACGTTTCTCATCATCAGTCCCCGCTCTCAGCCGCAGTAGGGTTTTCATCCCCTGCCTTTCGCCATCCGCTGCCTCTTCCTCTCATGGCCTATTCCTTTCAGAGTTCGCTAGGCAACGCCTCCAGTGCAGTATCTGGGAAAGACAGGTCATCTCCCGAGTCCTTGGACCTGACCAGGGAAACTGCCTGTCTGCGGACCAAAGTATCATCACACCACATGAACCATCGTCCCTGCTCACCAATCCATCCATCCAGCACAGCGGAAGGTCTCTCGTTATCTCTCATTAAATCTGAGTGTAGTGACTTGCAAGACATGGCGGACATTTCACCATACTCTGGAAATACAATACAGGAGGGACTGTCACCCAACCACCTCAAAAAGGCGAAGCTGATGTTCTTCTACACGCGGTACCCCAGTTCAAACATGCTGAAGATGTTCTTCTCTGACGTGAAGTTTAATAGGTGCATCACCTCACAGCTTATCAAGTGGTTCAGCAATTTCCGAGAATTTTACTACATCCAGATGGAGAAGTTTGCTCGTCAGTCTATTAACGATGGGACAACAAGCACGGAGGAGCTGACTGTCTCCCGTGACTCTGAACTCTTCAGAGCCTTAAACATGCACTACAACAAAGCAAATGATTTTGAGGTGCCTTTAAGGTGCTTTTTGCAGGGTGCTTCTGATGTCTTCTGTGAGCAGGTTCCGGAGAGGTTCTTGGAAGTGGCTCAGATCACATTACGAGAGTTTTTCAATGCCATTGTTGCAGGCAAAGACGTTGATCCTTCCTGGAAGAAGGCCATCTACAAGGTCATTTGCAAGCTGGACAGTGAAGTCCCGGAGGTTTTCAAATCTCCAAATTGCCTGCAAGAGCTACTACACGAGTAA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HPD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05044	HPD	Homeo-prospero domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR023082	Domain	Homeo-prospero domain	Interproscan
IPR037131	Homologous_superfamily	Homeo-prospero domain superfamily	Interproscan
IPR039350	Family	Prospero homeodomain family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12198	HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-