Gene detail

Detailed information of XP_032879006.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032879006.1	BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN USF3	NC_045961.1	86806985	86844697	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032879006.1

ATGCCAGAAATGACAGAAAATCAGACACCGCTGCGCATAACTCACAGGAAGAAAAATCGAGAATCTCACAACGCAGTGGAAAGACATCGAAAGAAGAAGATTAACTCGGGAATAAACAAAATTGGAGAACTAATTCCATGCTCTCCTGCTCTGAAACAGAGTAAAAACATGATACTGGATCAAGCATACAAGTACATTTCAGAGCTGAAGAGACAGAATGATGAAATTCTTTTGAATGGGGGAACCAAAGAACAAGGTGAAGAAATTGTCAGACTACGAAATCAGCTGGATAATCTACGGAATGAAAATGACCGTTTTCTGGAATTACTTAAAGCTAACGACATCTGCTTGCATGATGACCCTACCATTCACTGGAAGAGGAAATTCAAGGGTTCAAAAGTTGCAATGATGATATCTCCCAACCAAATGCAAGACGATATGCTCATCTACACAAATGGAAACCAACTGAATGGGAATTGCCACCAGACCACTGTGCAGAGTTCACCAGAGCTACCGCTGAACACCCTGAAGAACACAACTCCAGAATCATGCCTTGATATAATGATGCCGATGGCTGAGATTGGCCCAGTGGAAAATGGGGTCCAACTTCAGACCGGGATCTCTGAGCAGGATGTTCCGGACTGCCTCCCTACAGCTCGAACTTCTCTGAACACTGCACCGTGCACTACCACCACGACCATTGTACAGAGTATGCTGAATGTTTCAACGAACACATCTGATCCAGACCTTCTTCAGCACTCATACAGCAGCTGCGCACTGACGCCTTTAGCCAGCCCAACAAGCACCCCTGCCCCAATTGTGCTGGACTGTCCCCAAGCCAGATTTGGACAGAGCATCTCTGCGAGTGGATGCCCTGTCCCGAATGTTCCTGGAGTTTCTGCAAACGCTTCCCTTGCTTTGCCATTGCACATGCAACAGATGGGAACGATGTGTATGGATGTGGAGTGTCCCAGCGGGATAACACAGCAAACTGTTTTGGGTTCGACGTCGGCCAGCGGCCAGAACACGGAGTTAAGGTCAATGAAATGGCCCATGGTAGAATGCCCGCAAAATGTGGTGATGCCAAACGCTTGCCAAAATTCACCCACGCTGGCCCGTGGTTTCCCGCCGTCTTTCAAAGCTGGGGCAATGTGTAACAGCAGTATGATGTCGTCTTGTCCTGTAGCCAGCTCGTGGACAGTGTCCTGCCCGGTTTCTACAAGCGCCTGCTCTTCTGAGTCAAACGGTCTTGGTGCCTTTACTTGCATGACTTTCGCGGGTAACACTCGGACTACATGGACCACTTTACAGCTGGCCGGAAACACAGTGCATCCTGTCAGCCAGGTGAGCTGTAGTATATTGCCAACGACATTAAGCGAAAATGTCAATGCCAGAAGCTCCTTCCACGCCTCTGAGGCCGGGCCGCTGGTTAATAACGTGGCTGCGGTGTCCTCGGCTTCCTCCTCCACGCTTCAAGGGACCTCCTTCTGCTCAACCTACAGCCCACTCAACCCACAGGTGCCAGTCACCCTCCAGACCCCCCTGCAGCCCGTTCCAGCTGTGCCCACCGCCAAGGTAGTGTCACTGCTGCCTCCCTTGCAGGTGATCCAAATGGCCCACACCTCGGGTGGGTCAGACCCGTCCTCTCCAAACAGCCAGAAGCTGATCATCCTGCAGCCGGCGAATCCCAGTTCGCCGGCGGTGGTGAGGGGGGCCATTAACAGCCAGGCACAAGGTCAGCAGATAGTCATCATACAGGCAGCCAGCCAGACCGGCGTCTCCGTGGTCCCGCCCCACGCCAACAGAGCCGCCCCCTCCCTCGACTCCAGCGCGGGGTCGTGTAGCAGCGGGGCCGGCGTTCATTCAGTGGGAGGGAAACACCTTGTACACATCTTGCCGCGGCCCGTGTCCTCCTGCGGCTCCAGCAGCTCGCATTCTCCAGCGGTGACGGGCGCCGGCCACCACCAACAGCAGCAGCAGAAGACCATCTCTGTCAACGGCCAGATCTTCGCCGTGCAGCCCGTAAAGCAAGGGGGGAGCTCAATGCACATCATCCAGCCGACAACCAGCGCAGACCCACACACCAACGTAGCCCTCAACACCTTCGGTGCTCTGACCAGCCTCAGTCAGAGTGTCTCCCAGATGTCAGGGCCCTTAGGCCGTGGTCAGGCGCTCAGTCCCTCGGCCTCCAGCGCTCAGACCGTCTGCACCGCTGCCGCCACAGCGAGCAGCCCCTTCACCAACAACCTGCCCGCCGCCGCTCTTGCAAGCAGCAATCCCGTACCCCCAAAATGTGCCCACGGCGCACACCGCCCCTCCAAATGCAATAAATCGCAGAGGAAGCTTCTTTCTGCGAAGCACGGACTGTCCAAGAGGGCCAGGGGTTCACGGCACCAGCCGCGGGCAGCCGCCACCACCGGCGACCACGCCAGGTCTAACCCGGGCAGCCCACCCGAGTTTGCGGCCGTGGAGCAGGCGTTGCCTGCAGACTGTCTACCGGCATCTCAGCACCTGTCCTTGCCCCAGAACGCGGTCACGGTGACCACTGCCGCCGCCTCACACGAACAGACAGCTGCTACACTCTCCCTCCTGGCTCCCAGTTTAGCAGAAGCCTCGGCTCTTTGCCCTGAGCACCCAGAGGAGACGCGGGCACCGCCCGCATCGCTGGCAGCCTCCTCGCCCCGGGTGGACCTGCTCAAAGACGATGTGTGCGCGGTTACGGAATCAACGGCCCCTACTGCCTACTGCCCGGCAGGAGAGACGGGGACGGGGAAGGAGAGCGGCTTGGGTCGATTTCAGGCTGTGTCGCCGACTCCACACGGTATTCCTGGCATCACCAGCGTTTCCCAACAGCTGGAGTCCCTGGCAGCGGCCCAGCGCCACGGACGCGTGGAAGCGAGCGAGGAGATGGGCAGCCAGGAAGGCAAGGCATGCGGCAGGGAGCCGGCCCCCTCAACCGGCAAGCAACGAGCGGATAACGGGCTGCCGAGCGGCGAGACGGAGGGCGCCACCCAGCCTCATCCATGCCCCCCGGAGCATGAGGGCACGACCGCCCCGCTCAGCGCCCAGCGCCAGACTGAGTCTCCCATGTCCACCAGCTCGGGCAGCAGCCGCGGCTTCTCTGTCGCCTCCCTACTACCGGACAGCGCCCGGGAAGACGGCGCCTTCAACTCCTACGGCCTGCCCGACCACAGCGACATAGTTTCCCTCGCTGCCAGGGCCATATTCGAGCAGGAGAGCCCGGGCAAGGGCTCAAGTCCCGACCTGGTGGGGTACGAGGCCGGAGCGAAGCCCCCGTGCGCGGAGAAAGCCCCGTGTCCGAGTCTACAGCCGGACAAAGGCCCAGGAATGGAAACCAATGCTGTCCAGTCGCAGGGTCCGGCCGGAGTGGCCTCTGTCGCCAAAGAAACGGCGAGCGTGTCCCTGGCGTGTCCACCTCTCCCCAACCCAGTTGCGATGAACCAGGGCCACGGCGGCCCGACCGCCCATACTCAGCTACCGAGCGTCTACCCGGAACAGGGCGCCCCCCTGGCCGAATACCCCGCCAAAGTTCACCCCCAGTCTCCCCTCGCCCTGGAGTCGCGGCTGAAGCAGAGCGTCGAAATGCGAAAAGACGCGAGCAAGCGCAACGGGCCGACCGACCACTTGGTCTCCACGGCCAAGAGGCAGAAGCAGTGCCAGGGTGGGGGGCCGCGCCTGGACTGCAAGCCGGGGCTCGGCGCTTTAGCCGGGCACCTGTGCGATCGCGACCCGCCCTTCATGGCGCAGATGCCGGCCAGTTCTCCCAACCACAACCTCGGCGCCTTGTTCCCTTCCACTAATTTCCTGGGCACCAGTCCGGAGGAGACGCTGAGGACGATGGAAGCGCACTGCAACGGACCGCAGCGAGTGCAGGATCCGGCCGCACAGCAGATGCAACCGCACGGGCTGCTCCAGGCCAACGGGTCGTCTCCGAGCGGCCTGCCGCTGGCCCACACCCACTCCTACTACAAGCACCACCACCAGAGCCAGGCCCGCGACCGGCACCTGTACCAGCTACAGCACCACTACTCGCACGGTGAGGGATCGGCTCAAGGCCAGGCTCACGGCGTCCAGCACCAGCTCCGCGCCGCCCCGCAAGACGCCCAGATGCAGAAGAAGCGAGGGCTGGTGCGGGCGGCGCCGGGATCGCAGCTCTCCATCCAGCCGAAGCAGCAGCACCAGGCGGGCGGCGGGCAGGGCCGGCACAAGGGCAGTCAGCAGCCGCTGCAGCAGCAGCAGCAGCACGTACCGCACACGTACTTCAGCAACGCGCACCCGGACAAGAGGTGCGAGAACTCGGCGGGAGGCCGGAGCCATCACCTGCAGAGCCTCCACGCCCCGGACCTGCTGCACCCTGACGGCGGGCGAAGCGGCCAGGGGCCCGGCATCTTCCCCGAGCAGGTGGGCGGACAGTCGCGCATCCAGCGGCTGCTGACGTCCAGGTCTCTGGAGCAACAGATGGCTTCCAAAGCCAGGCCCTCCGACAAGCAATGTCCCTCTCACCGCCAGGAGAGAAACCGAATCTCCAGCTACTCGGCAGAGGCTCTGATCGGGAGGCCTTCCAGCGCCGAGTCGCGCATGGCCATGCAGAGCCCCAGGGCCGCCGTGGAGCAGTCCGAACTGCGCACCTATCTCGACCTGTCCATGAACAAATCTTTGCCCGTGCACGGCTTGCCACCCAAACTCTCAATGGAACACTGCATGGCGGCCGATGTACAGTCTCTGGGCGACTGCCAGCCGTTCAAAGCCACCCAGGCGGTGGGCAACTTTGAGGTGCAGTCTTCCCGGGGCAGCGAGATGGGCGGCGGCATGTCGGCGCACAGGGGAATCCAAGCGCACGGCTTCAGGCTTGCCCAGGGAACCGGCGCCGAGCGACCGGCCCGCCTGCCTTACTTGCCCATGCAAGGGATCTCGACCGCGGGCGGGGCATCGTTGAGGGACGGCGACGGGTCTTGCCACCAGAGCTTCTTGCAGAGCCTGCTGCCCCCTCCTCTGGCGGAGCAGCTGGGCGGCGGGCCGGGGCCGGAACATGGCAGGAACTCGCAGTGCGCTCTGCCCATCAGTATCGAGTACAGTTGCGCACCGGCCAGGGACACGGGGCATGGTCGGCGGGACGGCGAAGGGCAGAGCTGCGACCTGGGTCTGGGCGGGCTCGGATCCCGGAGCCTACCCTACCCCGACCCGTCCTCGGTGTCCGAAATCCAAAGCAGAAACAGCAGCCCCAGCGTGGCGGCGCAGAAAGCCTCGTTGAGACTGGGCGACAGCCAGGGGAACAAGTGCCACGCCAACGCGCAGGTCTCCTCCAACATGCACGGAGGCGTGCGGGTGGCGCTGGCCCACGGAGCCGAGCGGTCTCACCCGCTCCAGCCCGGCTCGTCGGTGGCGCAGCGAGTCCGGCACCAGGCGCAGGGCGGCTCGGCGGGCAAGCTGCGGCCGCGCTCGGTCAGCCACCGGGGGGGCTCCGAGGCGCTGGAGCGCAGCCTACAGCTGCCGCTGCCGTCCGGCGGGGGGATGATACTGGGCAGGCAGCAACCTAACACCACCCGCACCGCCAGCATCGTGCGCTTCGTCGCCGACAACCAGCAGGTGCCCAGCGAGAACCTCACCCAGGAGCAACTCTCGCAGAGCTTCGGCTTCCCCTTCATCGCAGAGGGCGGCATGAACCCGCCCCTCAACGCCAACCCTCCCTTCATCCCCCCGGTGACACAGCCGGGCGCGAACCGGACCCCTACCCTCATTCCGGTGGAGCAGCAGAACCCGCTGCCTTCATTCTACCCTCCGTACTCGCCGGCGCACCCCAACCTCTCCAACGACCTCTCTCTCCCTTACTTCTCCAACCAGATCTTCACCAGCCCCAACACGGAGAAAGCCAGCAACCCGTTCGGCGCCATCCTGTCGCCGCCTCGGCCCGTTGGCTTTCCGCAGCCCAGTTTCCCACTGCTCCCCGACATCTCTGCCAGGCCCATAGCCAACAGCTCCAGCATCACCGCGCACCTGTCTAACTTCAACCTGACCACCCTGTTCCCCGAGATCGCCGCCGCGCCCATGGCCGCAGACACCCCCGCCATGCCCATGTCACCTCTGTTGCCTTTAACCAACCCCGCCCTCTCCGACGTCTCCAAACAGCACTCCAACAGATCCGCGCACAATATCAGCCACATCCTAGGCCACGACGGCAGCTCGGCCGTGTGA

Transcript

Protein

XP_032879006.1

MPEMTENQTPLRITHRKKNRESHNAVERHRKKKINSGINKIGELIPCSPALKQSKNMILDQAYKYISELKRQNDEILLNGGTKEQGEEIVRLRNQLDNLRNENDRFLELLKANDICLHDDPTIHWKRKFKGSKVAMMISPNQMQDDMLIYTNGNQLNGNCHQTTVQSSPELPLNTLKNTTPESCLDIMMPMAEIGPVENGVQLQTGISEQDVPDCLPTARTSLNTAPCTTTTTIVQSMLNVSTNTSDPDLLQHSYSSCALTPLASPTSTPAPIVLDCPQARFGQSISASGCPVPNVPGVSANASLALPLHMQQMGTMCMDVECPSGITQQTVLGSTSASGQNTELRSMKWPMVECPQNVVMPNACQNSPTLARGFPPSFKAGAMCNSSMMSSCPVASSWTVSCPVSTSACSSESNGLGAFTCMTFAGNTRTTWTTLQLAGNTVHPVSQVSCSILPTTLSENVNARSSFHASEAGPLVNNVAAVSSASSSTLQGTSFCSTYSPLNPQVPVTLQTPLQPVPAVPTAKVVSLLPPLQVIQMAHTSGGSDPSSPNSQKLIILQPANPSSPAVVRGAINSQAQGQQIVIIQAASQTGVSVVPPHANRAAPSLDSSAGSCSSGAGVHSVGGKHLVHILPRPVSSCGSSSSHSPAVTGAGHHQQQQQKTISVNGQIFAVQPVKQGGSSMHIIQPTTSADPHTNVALNTFGALTSLSQSVSQMSGPLGRGQALSPSASSAQTVCTAAATASSPFTNNLPAAALASSNPVPPKCAHGAHRPSKCNKSQRKLLSAKHGLSKRARGSRHQPRAAATTGDHARSNPGSPPEFAAVEQALPADCLPASQHLSLPQNAVTVTTAAASHEQTAATLSLLAPSLAEASALCPEHPEETRAPPASLAASSPRVDLLKDDVCAVTESTAPTAYCPAGETGTGKESGLGRFQAVSPTPHGIPGITSVSQQLESLAAAQRHGRVEASEEMGSQEGKACGREPAPSTGKQRADNGLPSGETEGATQPHPCPPEHEGTTAPLSAQRQTESPMSTSSGSSRGFSVASLLPDSAREDGAFNSYGLPDHSDIVSLAARAIFEQESPGKGSSPDLVGYEAGAKPPCAEKAPCPSLQPDKGPGMETNAVQSQGPAGVASVAKETASVSLACPPLPNPVAMNQGHGGPTAHTQLPSVYPEQGAPLAEYPAKVHPQSPLALESRLKQSVEMRKDASKRNGPTDHLVSTAKRQKQCQGGGPRLDCKPGLGALAGHLCDRDPPFMAQMPASSPNHNLGALFPSTNFLGTSPEETLRTMEAHCNGPQRVQDPAAQQMQPHGLLQANGSSPSGLPLAHTHSYYKHHHQSQARDRHLYQLQHHYSHGEGSAQGQAHGVQHQLRAAPQDAQMQKKRGLVRAAPGSQLSIQPKQQHQAGGGQGRHKGSQQPLQQQQQHVPHTYFSNAHPDKRCENSAGGRSHHLQSLHAPDLLHPDGGRSGQGPGIFPEQVGGQSRIQRLLTSRSLEQQMASKARPSDKQCPSHRQERNRISSYSAEALIGRPSSAESRMAMQSPRAAVEQSELRTYLDLSMNKSLPVHGLPPKLSMEHCMAADVQSLGDCQPFKATQAVGNFEVQSSRGSEMGGGMSAHRGIQAHGFRLAQGTGAERPARLPYLPMQGISTAGGASLRDGDGSCHQSFLQSLLPPPLAEQLGGGPGPEHGRNSQCALPISIEYSCAPARDTGHGRRDGEGQSCDLGLGGLGSRSLPYPDPSSVSEIQSRNSSPSVAAQKASLRLGDSQGNKCHANAQVSSNMHGGVRVALAHGAERSHPLQPGSSVAQRVRHQAQGGSAGKLRPRSVSHRGGSEALERSLQLPLPSGGGMILGRQQPNTTRTASIVRFVADNQQVPSENLTQEQLSQSFGFPFIAEGGMNPPLNANPPFIPPVTQPGANRTPTLIPVEQQNPLPSFYPPYSPAHPNLSNDLSLPYFSNQIFTSPNTEKASNPFGAILSPPRPVGFPQPSFPLLPDISARPIANSSSITAHLSNFNLTTLFPEIAAAPMAADTPAMPMSPLLPLTNPALSDVSKQHSNRSAHNISHILGHDGSSAV

Gene family

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR048064	Domain	Upstream transcription factor 3, basic helix-loop-helix domain	Interproscan
IPR053252	Family	Epithelial-mesenchymal transition regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46970	BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN USF3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0010719	Biological Process	negative regulation of epithelial to mesenchymal transition	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-