Gene detail

Detailed information of XP_032875108.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032875108.1	ZINC FINGER TRANSCRIPTION FACTOR TRPS1	NC_045959.1	33030961	33289897	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032875108.1

ATGGTCCGGAAAAAGAATCCACCATTGAGAAATCTTGTGAGCCAAGAGGAAGGTGAAGATTGCCAGCTCCCTGGGGCAGAGAGTGCCGTCATTCAGAAGACTCTTGTACGCTCGGGACCCCCGGACCCCATGCAGGAACATAACAGCCAGCAAGATGCACTAGAGTCTGTCAGCAAGGAGGAACATTGTCTGCGTGTCGCAGACGGAGCCGGCATCAAAAGCGACTTGAAAAGCCCCGCACTGGGCGAAGGGAATGGCTTCAATTATAAAAGCCACAAGAAGGGAGGAAATGTTCCATCCTTCCCGCAAGATGAGGTGACAGACAGAAATATGTCTGCGCTCTCATCCCAGGCTGCTAGCGGATTCTGCGAGGGATGCAAGTCTCCGAGCAGATCAGAACCAGATGACGGGGATGGCAGGAGCTGCGATGTGTCTGAGAACCCCTCGGAATTAAACCATGCAGCTCAAGCGTCACCCAAAAGTGGCCGTGAGAAGGACGAGCTGCTGCAGCCTGACCCACCTGACCATCACACTTCAACCCCGGGCGCCATGCCTTCAGAAACCTCTCAGGTGCTTTCAGATGGGGCCGTTGCAATTGATGAATCAAAGGCACAACAGTTGACTGACAACCCAGACGCGGCGCCCCTGACTCCTGAACTGCAAGACTTCAAGTGCAACATTTGTGGTTATGGCTATTATGGAAACGACCCGACCGATTTGATCAAGCATTTCCGCAAGTATCACCTCGGCCTGCACAACCGTACCCGCCAAGATGCAGATCTGGACACCAAAATCCTGGCATTACATAACATGGTGCAGTTCTCACAATCCAAAGACTTTCAGAAACTGAGCCGCAATACCGGCTTGCTAACTGGGATGTTACAGGATCTGAATGCTCAACGACCCGCCTTATTGAATGGGACCTATGATATACACGTTACTCTGGGAGGAATGTTCATTGGCATAGGGCGCAAAACCCCCGACTGCCAAGGCAACACCAAGTATTTCCGATGCAAGTTCTGCAACTTCACCTACATGGGCAGCTCGTCGAGTGAATTGGAGCAGCACTTCGTGGCAGCACATCCCAATAAGATGAAGAATGTGCCTTCCGCCCCGGAGTCCGGAAAGGACGCCAATAAATCTGAGAAAAACGCCAGCAAAGGCAGCCCCGCCACAGAGCGCCATTTACTTCGCACGTCCGACCCTGAAGATGCAGGGAAATGGCAAGACAAGTCCACCATCAAGGCGGCTGATGACACTCCCATCGGCTACTCTGTTCCCATCAAGTCCATGGACACCTCCAAGCAGAACGGGGTGGACTCCACCTGTTACTTCTGGTGCAGGTTCTGCAGTTTCAGCTGCGAGTCCTCGGACACTCTAAAGCTCATGGATCATTACAATAAGCAGCACCAGGAACACCAGCGCAACAGCTACTTTAACAGAGAATTCCCGGACAAAATGAGCAAACCAGTGGCGGCCCTCAATCAGAGCGACTTTCTAAAAGAGCGCAAGCTTCAAGCGGCCAATAAATCGGACGCCGAGTTCCCGGTGAAAGCAGAGAAAGGCGCGACTTCATCCAAAAAGAAGGACGGCACCAAGTCCACAGAGGAGAACGTGGTCACCAGCTACAACTGTCAGCTGTGCAAGTTCAGGTACTCCACCAGCCATGGGCCAGACGTGATCACAGTTGGGCCCCTGCTGCGCCATTACCATTACATCCACAATGTTCACAAGTGTACCATTAAGCACTGCCAGTACTGCCCTGGCGGGCTGTGCGGCCCGGAGAAACACCTCGGAGAAATCACCTACCCCTTCGCTTGCAGGAAAACAAACTGCTCACACTGCACCCTGTTGCTCTTGCACTCACCCCAGGGGGCAGGGGGCAGTGGTCGGGTGAAACACCAGTGCGACCAGTGCTCTTTCACTGTCCAGGATGTTGATGTGCTCCTGCAGCATTACGAGGCCTTACACGGCCCGGCCAAGGTCGAGGATGGCCAACACGGAGGCGACGGACAATTGACTGGCGAGGAAACTGAAGAGCATTGTTGCACCAAATGCAACTTTGTCACACAGGTGGAGGAAGAGATTTTCCGGCACTATAGGAGAGCTCATAACCTCTACAAGTGCCGTCAGTGCAAGTGGAGCGCTCCCGACACGCAAGCTTTACTGGACCACTTCAACACAGCTCATTGTGGGGCCCAGGAGCCGGCGAGCAGTGGGAGCCCCAGCGACGGGGAGTTGTCGCCAAACCCCGGCACCAGCAACCACAACCCGGGTAATGGCGAGCAGGAGGCTCGGCACCGCACACCCACCCCGTCAGACAGCAGTGGCAGCAGTCAACCCATGCCTCTGGCAGCGGCTACAGCAGCAGCGGTGGCAGCGGCATCGCCCGAGGACAAGGAGGGGCGGGGTTGGCTTGTGAGCAGCAAGGAAGACACCAGGAAGCAGGGGGAGCTGCCTAAGGGGAGCCCATACCCAGGCCAGCCCGGCCCCACCACCACCACCACCAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCCTGGAGGGTCACAAGAGCAGCCGCAGGGTGGCCGAGGAAGCAGACGGGAGCCTTCCCGTGTATGGGATGCAGCCCGCCGACGCCAAGGGCTTCCCAGGCGGGTTGCAGCAGCAGCTACCGGGAGGAGGCGAGCGGGACAAGTCCCGTGCCCCCACTCCCCAATACCCCACAAACAGCGAGCTGAACAAGGCGAGGGAGGAGTCGCAGACTCTGCTGCGGAGGCGAAGAGGCTCGGGGGTTTTCTGTGCCAACTGCCTGACTACAAAGACCTCTCTCTGGAGGAAGAACGCAAATGGTGGATACGTCTGCAATGCTTGCGGCCTGTACCAGAAGCTGCATTCGACTCCGAGGCCCTTAAATATTATAAAGCAAAGCAACGGGGAGCAGATCATTCGAAGGAGGACCCGAAAGCGGCTTAACCCCGAAGTATTGCAGACTGAGCAGGTCAACAAACAGCAGAGGATAAGCAATGAGGAGCAGCTAAGCGACAGCCCACTAGACCGGAAAGTGGGGGAGCTCCCTTCAGAAGGTCAGCATCGGGAGCCTCAGCAGTCTAACCTGAGCAAACTTGATCTCTTTAGTTCTGTGAGTAAACCACATCAGGGCCAATCCTCACTGGTGGTTGGCCAGGCAGTGGACCTTCACAGAAGAATGCAGCCTCTCCACGTACAAGTCAAGAGCCCTCAGGAAACCAGTGTTGACCCAGCAAATTGTTTGCCTACATCAGAAGGGAAAGGAAGCTCAGAACGTGGGAGTCCGATTGAAAAATACCTTAGACCCACCAAGCACCCAAATTACTCGCCTCCTGGAAGCCCCATTGAGAAGTACCAGTATCCTTTATTTGGATTTCAATTTGTGCATAGTGATTTACAAAATGAAGCTGATTGGCTGAGGTTCTGGAGTAAATATAAATTGTCAGTCGCTGGGAATCAACACTACCATATGCCTGGCCTGTCAAATCCTTGCCAAAACTTTGTGCCTTATCCTGCCTTTAGTCTGCCTCCAAGTTTCTCGTCCCTTGGATCTGATAATGACATTCCTTTAGATCTGGCAACAAAGCATTCCAGGTCGGGACCAGCTGCAAATGGTGCCACAAAGGACAAAGCCAATGCATCAGTGGCCACCGCAGAGGAGAGCGTAGAAAACGTGGTCAAAACTCCGGACAAAGTTGACCGAGGCACTCAAGATGAATCACTGACAAAGTGCGTCCATTGCAGCATTCTCTTTATGGATGAAGTGATGTATGCATTGCATATGAGTTGCCACGGTGAGAGTGGACCTTTCCAGTGCAGCTTATGCCAGCATTTCTGTACAGACAAGTATGACTTCATGACGCACATTCAGAGGGGCCTGCATAGAAATGTGCAAACTGATAAAAAGTTGCAAAGCTAA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-GATA

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00320	GATA	GATA zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000679	Domain	Zinc finger, GATA-type	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR028440	Family	Transcription factor TRPS1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47034	ZINC FINGER TRANSCRIPTION FACTOR TRPS1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-