Gene detail

Detailed information of XP_032869305.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032869305.1	GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN	NC_045993.1	2596889	2630657	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032869305.1

ATGGCGGCGCCGCGGGAGGAGGAAGAGAGTCTGGAGGCGCGGCTGAATAAAGCTACAAATCCCTTAAACCGAGAACTGGACTGGGACTCGATTACAGCATTCTGTGACCAGCTGAACAAGGAATTGGAAGGACCCCAGCTTGCTACAAGATTTCTGGCACATAAGATCCAGTCCCCACAAGAATGGGAAGCTGTTCAAGCCTTGACGGTCTTGGAGACGTGTATGAAAAACTGTGGCAAAAGATTTCACAATGATGTAGGAAAGTTCAGATTTTTGAATGAACTAATCAAAGTGGTGTCGCCCAAATATCTTGGAACACGATCTCCCGAGAAGGTGAAAAATAAAGTCCTAGAATTGATGTTCAGTTGGACAGTGGGTTTACCAGATGAACTGAAGATCACAGAAGCTTATCACATGCTGAAAAAGCAAGGAATTCTAAAGCAGGATCCCGTGTTGCCTAAAGAAGAGCTTCTCCCTTTACCCCCTCCGCGTCCAAAGAATGCTATGTTTGAAGATGAGGAAAAATCGAAGCTACTGGCAAGACTGCTGAAGAGCAACCACCCTGAAGATCTACGAGCTGCAAATAAACTAATCAAGGAGATGGTCCAGGAGGACCAGAAGAGAATGGAGAAGATTTCTAAAAGAGTGAATGCAATTGAGGAGGTGAACAATAACGTTAAACTTCTGAGTGAGATGCTGGAGAACTACAGCAAAGATGAAACCTCGGAGAGCAATGAAGAAATAATGAAGGAATTGTACCAGCGATGTGAGAAGATGAGACCCACACTATTCAGATTGGCGAGTGATACAGAGGATAATGATGAGGCTCTCGCTGAAATCCTCCAAGCGAATGACAACTTAACGCAGGTCATTAACACGTACAAGAAGATAGTGAAAGGCGAAGAAATCAATGGGGTGACTGACACGCCGAGCATTAAAGCCAGCCGCTCTGCACTACTAGATCTGTGTGGGTTGGAGACTGGATCAAATGCTCCATCCTACCCTGCTGCCCCCGCTAATCAACATTGGAATGCAGAGCTCGCACCAGATCTCACCGGCTCCATATCATTACTAGATGATGAATTGATGTCATTAGGGCTGAATGACCTCGTCCCCAATACAATGCCCACATCGCAGGCTGTCGACTCAAGCAATTGGAATACATTTCAGTCTGCCGAGCCTGATGAGCTGAGTGGCCCTGCAGCCTCTGTGGAAGCCAGTATGATGTCTACGGAATTGCTAAAGCCAGCTACTTCGACTGCCTGCCACCAAAATCCGGCTGCCAGCGCTGGAAGTAAAGCCTTGGACGACTTGGATATGTTGGGGAAAACTCTCCTTCAGCAGTCGTTGCCTCCAGAATCTCAACAGGTTAAATGGTCGGCTCCTCAGCAAAGGCAAACACTTCGAGATCTCCAGAACAAAGCAGGCACTAACTCCGCATCTGCCATGGACACCATGCCACTCTTGCCTGCTTTGACCAAGAGTGTCTCACCCATCTTGACAAGACCGATCCATCCGACAGGCCTTACACCTCACCCTGATCAGCCACTGGTGTTTGGGCATGGTTCGTTACTTGCCTCAGCCTCTGCCGGTGCCTCGAGCATAGGACAACGCGGAGCTCACTCCAGCGCTCACTCTGGCCTCAAATCATCACTGCTGTCTCACCAGGAAATATCGCTAACTAATGTTTTAGTACCTCTAGAATCTATAAAACCAAGTAGCATCTTACCAGTCACAGTGTACGATAAGAATAGTTTTCGTATTCTCTTCCACTTTGCAAAGGACCCCCCTCATGGCCAGCCTGATGTGTTGGTGGTGGTTACGTCTATGATAAGCACAGCACCACAAACGGTGAAAAATATAAGATTCCAAGCTGCTGTCCCAAAGGCCATGAAGGTGAAACTACAGCCTCCCTCTGGCACCGAGCTGCCAGCATTCAACCCTCTCGTTCCACCTTCCGCAATTACACAGGTCTTGCTTCTAGCAAACCCACAGAAGGAGAAAGTGCGATTACGATACAAGCTCACGTTTGCGCTGGGCGACCAAACCTTCAATGAAATGGGAGACTTGGACGAGTTCCCACCTCCAGAGTCCTGGGGGAGTCTCTAA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|GAT
Ubiquitin Family	UBD\|Alpha-Helix\|VHS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00790	VHS	VHS domain	Repeat	Interproscan
PF02883	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan
PF03127	GAT	GAT domain	Domain	Interproscan
PF18308	GGA_N-GAT	N-terminal extension of GAT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002014	Domain	VHS domain	Interproscan
IPR004152	Domain	GAT domain	Interproscan
IPR008152	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR008153	Domain	Gamma-adaptin ear (GAE) domain	Interproscan
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR013041	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR027422	Family	ADP-ribosylation factor-binding protein GGA1-3	Interproscan
IPR038425	Homologous_superfamily	GAT domain superfamily	Interproscan
IPR041198	Domain	N-terminal extension of GAT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45905	GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005802	Cellular Component	trans-Golgi network	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006893	Biological Process	Golgi to plasma membrane transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:0034394	Biological Process	protein localization to cell surface	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-