Gene detail

Detailed information of WZF232080 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF232080	PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47	HiC_scaffold_1	4325837	4327873	-

Gene Structure

More details in Jbrowse Sequence

CDS

WZF232080.1

ATGATGTGTTCTTTTGAGGAACTTGGTCTTGACGGCGATAGTGATGGAATTATTGAAGTTGACAGTTCTGCCCCAGTTGGCGAATGCTATGCATTATGGGCTGGACTTGATGATCCAATGATTGAAATAGCAATAACGCCTAATCGCGGCGATTGCTTGGGCGTGCGTGGTATTGCGAGAGATTTATCAGCAGCGGAAATTGGCACACTGAAGCCTTGCCCATTTAAAAATGATGAAATTGGTACTGGGGAAAGTTCTATTTCTTGGGATATACAAACTGAAAATGTCTCTGCTGTTTCAGGGCGTTTATTTATGGGTGTGAAGAATGTTGAAAGTCCAGATTGGATGAAGCAACGACTTTCCGCAATTGGCATTACACCAAAGACAGTACTTGTTGATATTACTAATTATATTTCATTTGAACTTGGTCGTCCGTTGCATGTTTTTGATGCTGATAAAATCGGCAAAATTTTAACAATTCGCAATGCAAAAGATGGTGAAAAAATGTTAGGTATTGATGGTAATGAATACGAATTATCATCTTCTATGACAGTTATTGTTGATGAAACAGGTGTACAGTCCGTTGCGGGTATTATGGGTGCGATGGGCAGTTCTGTTACAGAAGAGACAACAAATGTATTTGTTGAATCTGCGTGGTTTGATCCAATTAACATTGCTGAAACAGGTCGTAAACTTGGTATACAATCAGATGCTAGATATCGTTTTGAACGCACAGTAAATCCGCTTTCAAATGGATTTGGAATTTCTAGTGCAACGAAACTTATAACAGAGATTTGTGGCGGGTCTTTTTCAATAGTAACAGATGAGGGCACGCCAAGGTATAAAGAATTAGAAGTTTCATTAAGATTGTCTGCACTTGAAGCACGCAGTGGTATAAAAGTACCTAGTGAAACTGCGGTCAAAATTTTAAATGACTTAGGGTTTAATTCTGTACTTAACGGTGATGTTATTGATACTAAAGTTCCGTCGTTCCGTCCTGATGTTGAAGGCGAACATTGTTTGATTGAAGAAGTTCTTAGAATATATGGCTTTGATAATATTCCTGCCGTTGCGTTACCTAAATTAACAGATATTTCAGAAAATGTTTTAACACCTTTACAAAAACGTATAGGTTTTGCTCGTCGTGCGTTAGCTAGCAGTGGTATGGACGAAGCTGTTACATATGCATTTATGTTGCGTAAGCATGCTGAAAGTTTTGTTGACGGTGGCGTTAATGAAAAAATTGTTTTGCAGAATCCAATATCAGCTGACTTAGATACAATGCGTCCAAGCATTTTACCTAATTTACTTAATGCTTATAATCGCAATAAGTATCGTGGTATCTCTGATGTGGCATTGTTTGAAGTTGGTGGAACATATTACGGAAACACACCTGATGACCAAATCAATCGTATATCAGGTATTCGTGCAGGAAGAACAGGCGATAAGCATTGGCTAGAAACACCACGCAATGTTGATGTTTTTGATGCTAAGGCGGACGCTATTACTGTATTAAAAGCAATGGGTATTTTGACTGATAACATTATGATTAGAACAGATGCTCCTAACCATTATCATCCAGGGCAATCAGGTACTATGTACCTAGGTAAATTTGCTCTTGCTACATTTGGAACTATTCACCCAACAGCAATGAAAACATTGGGGATTAAAGGTTCAGCTGTTGGCTTTGAAATTAATTTAAATGAGCTTCCTCCTGTTAAAAATAAAGGAAAAACTCGTCCGCTTTTTAAACCTAGTCAGTTCCAAAGTGTAAATAGAGATTTTGCTTTTGAAGTCGATTTAGATATTACTAGTGAGAAAATTATAAAATCAGCAAATATTGATAAAAACTTAATCACTGGGATTAGAATTTTTGATGTATTTTCAGGTGATGAAGTTTCAGAAGGTAAAAAATCTGTGGCGATTATGGTGTCTATGCAAGCAAAAAATAAAACGATGACAGATGAAGACATTGAATTAGTTTCGGATAAAATTATTGCAAGTGTATTAAAATCAACAAATGGTAGTGTAAGATGA

Transcript

WZF232080.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03147	FDX-ACB	Ferredoxin-fold anticodon binding domain	Domain	Interproscan
PF03483	B3_4	B3/4 domain	Domain	Interproscan
PF03484	B5	tRNA synthetase B5 domain	Domain	Interproscan
PF17759	tRNA_synthFbeta	Phenylalanyl tRNA synthetase beta chain CLM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002547	Domain	tRNA-binding domain	Interproscan
IPR004532	Family	Phenylalanine-tRNA ligase, class IIc, beta subunit, bacterial type	Interproscan
IPR005121	Domain	Ferrodoxin-fold anticodon-binding domain	Interproscan
IPR005146	Domain	B3/B4 tRNA-binding domain	Interproscan
IPR005147	Domain	tRNA synthetase, B5-domain	Interproscan
IPR009061	Homologous_superfamily	Putative DNA-binding domain superfamily	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR020825	Homologous_superfamily	Phenylalanyl-tRNA synthetase-like, B3/B4	Interproscan
IPR036690	Homologous_superfamily	Ferrodoxin-fold anticodon-binding domain superfamily	Interproscan
IPR041616	Domain	Phenylalanyl tRNA synthetase beta chain, core domain	Interproscan
IPR045060	Family	Phenylalanine-tRNA ligase, class IIc, beta subunit	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10947	PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004826	Molecular Function	phenylalanine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006432	Biological Process	phenylalanyl-tRNA aminoacylation	Interproscan
GO:0009328	Cellular Component	phenylalanine-tRNA ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-