Gene detail

Detailed information of WZF231950 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF231950	SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM	HiC_scaffold_1	4169294	4171789	-

Gene Structure

More details in Jbrowse Sequence

CDS

WZF231950.1

ATGATAAAATCTATGTTAAGATCAATGTTCGGTTCATTTAATGACCGTGAGGTAAAAGCCTTGCAGGAAACCGTAGATGCAATTAATTTATTAGAAGATGAAATTTCAAAATTAACTGATGCTAACTTAAGAGCAAAAACACAAGAATTTAAAGATAGAATATCTAATGGTGAAACTATTGACGACATATTAGTAGAATCATTTGCTGTCGTTCGTGAAGGTTCTAAACGATCTATCGGTCTTCGTCATTACGATGTACAGTTACTGGGCGGTGTAATTTTACAAAATGGTAACATTGCAGAAATGCGAACTGGTGAAGGTAAAACACTTGTTGCTACAGCACCTGTATATCTTAATGCTCTTACAGGTAATGGTGTTCATGTTGTTACTGTAAATGAATATCTTGCTAATCGCGATGCTAAGTGGATGGGGGAAGTTTATTCATTCTTAGGTTTAACTACTGGTGTAGTTGTTCCAAATATGAACGATGATGAACGCAAAGATGCATATGCTTGTGATATTACATACGCAACTAATAATGAATTGGGTTTTGATTTCTTGCGTGATAACTTACGATTATCGTTAGATGAAATTGTTCAGCGTGGACATAACTTTGCAATTGTTGATGAAGTTGATTCAATATTGATTGACGAAGCTAGGACTCCATTGATTATTTCAGGCCCTGCAGAAGACTCCTCAGATCTTTATATTACTGTAAATGAAATCATTGTTAATTTAGACAGTAAATTTGTTGAAATAGATGAAAAGTCTAAAAATGCTACCCTTACAGAAGATGGCCTAGTAGAAATTGAAGTTATACTAGAAGAAAAAGGATTGTTAAAAGATGGGACTCTTTATGATAATCAAAATATTTCATTGTTACACCATATTAATCAATCAATTAAAGCAATTTTTGCATTTAATGTTGAAAAGGATTATATTGTTGAAAATGGTGAAGTAATTATTGTTGATGAATTTTCTGGTCGTAAAATGAAAGGTCGTCGTTATAGTGAAGGTCTTCACCAAGCAATAGAAGCAAAAGAAGGTGTTGAAATTGCTGCGGAAAATCAAACATTAGCATCGATTACATTCCAAAATTATTTCCGTATGTATGGAACTTTGTCAGGCATGACTGGAACTGCTATGACAGAGGCAGGAGAATTTGAAGAAATATATAATTTAAAATGTATTGAAGTTCCAACTAATGTTAAAGAAGGTCGTATTGATTATGACGACGATGTATTTAGAACTTCTGATGAACGAGATGACGCCGTTGTTGAACAAGTTAAAATCTGTGTAAAAAAGGGTCAACCTATTTTACTTGGGACAGCTAGTATTGAACAATCAGAACATTTTTCTACAAAACTAGATTCAGCAGGCGTTAAACACAATATGCTTAATGCTAAAAATCACGAAAAAGAAGCTGATATTATCTTAGGTGCAGGCTTACGCGGTGCGGTAACAATTGCAACAAATATGGCTGGTCGTGGTACAGATATTAAATTGGGCGGTGAAAATGCCACAGATAAAGAGCGTGAAAAAATACTGTCTGTTGGTGGTTTGTTTGTATTAGGGACTGAGCGTCACGAGTCACGACGTATTGATAATCAGTTGCGTGGTCGTTCTGGTCGTCAGGGCGATGTCGGTGAAACTAAATTCTTTCTATCGTTAGAAGATGATTTAATGCGCATTTTTGGTTCAGAAAGAATTGATGGTCTATTGCGTAAAATGGGTCTTGAAAGAGGTGAGCCAATTACTCATCCTTGGGTTAGTAGAGCATTAGAGAAAGCTCAACAAAAAGTAGAAGGTCATAATTTTGAGATTCGTAAACAGTTAATTAAATATGACGATGTTACAAATGAACAACGCCATGCAATGTTTAAATTACGCAAAGAATATATGACTGATGCGGATGTTTTTGCTACTGCAAATGAAATTCGTTATCAAATGTTGGAATATACTATCAGTTCTGCTATACCAGAAAAATCGTTGCCTAATCAGTGGGATTTAGAAAAATTAAAAGTTGATTGTCAAATGCTATTTGCTGTAAATGTTCCAATTGAAGATTGGATTAATGAAGACGGTGTTGATGACCAAATAATATTTTCTAGAATTAAAGATTTTACTGATAAGCATATGCAACAAATGAGGTCAATTGATGACACTGCTATGCGTGAAGTAACGGTTAGCATTATGGTGCAAATTCTTGATTCTGCGTGGAAAGAACATTTATATCAAATGGATCACTTGCGTCAAGGTATAGGTTTGCGCGCATATGGTCAAAAAGATCCCCTTAATGAATATAAATCCGAAGCATACACTTTGTATGAAGATTTTTTACATCAGGCTTCAACACTTACAACACAATATCTAAGTCATTTGAAAATTGAAGAGCAAGAAGATAAAACTCCAGCATTAGGGGTTGGTGTTTCTCGTAATTCAAGTTGTTCTTGTGGTTCGGGTAAAAAGTATAAACATTGCTGTGGAAAAATTTAA

Transcript

WZF231950.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01043	SecA_PP_bind	SecA preprotein cross-linking domain	Domain	Interproscan
PF02810	SEC-C	SEC-C motif	Family	Interproscan
PF07516	SecA_SW	SecA Wing and Scaffold domain	Family	Interproscan
PF07517	SecA_DEAD	SecA DEAD-like domain	Domain	Interproscan
PF21090	P-loop_SecA	SecA P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000185	Family	Protein translocase subunit SecA	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR004027	Conserved_site	SEC-C motif	Interproscan
IPR011115	Domain	SecA DEAD-like, N-terminal	Interproscan
IPR011116	Domain	SecA Wing/Scaffold	Interproscan
IPR011130	Domain	SecA, preprotein cross-linking domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014018	Domain	SecA motor DEAD	Interproscan
IPR020937	Conserved_site	SecA conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036266	Homologous_superfamily	SecA, Wing/Scaffold superfamily	Interproscan
IPR036670	Homologous_superfamily	SecA, preprotein cross-linking domain superfamily	Interproscan
IPR044722	Domain	SecA, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30612	SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006605	Biological Process	protein targeting	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0017038	Biological Process	protein import	Interproscan
GO:0031522	Cellular Component	cell envelope Sec protein transport complex	Interproscan
GO:0043952	Biological Process	protein transport by the Sec complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-