Gene detail

Detailed information of WZF225540 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF225540	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	chr5	48520203	48542765	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

WZF225540.1

AATCGTGGTAATGTTGAATCTGACTGACCAATCGCTAAAGAGTTTACGACGTCATTAATATTCAAAACGCGCCAGGTCACATGTGATTTAAGGTTTTCCATGGACGATGACTTGCGAACCACGGGGTTTCCTACGACAGGGGGAATATACAGAACAAGATGAAAATGAAAAAGATTAACGTGTAAGAAACACTAACAGCACGTGTTTCTTCAAAGCTGATCATGGGAAAATCGAATTAACTAATCAATAAATTGCAGTCCTTCAGCTGCTGAGATTAACGTATGTTGCCAGAAACACGTGTCATTGCAAACGAGGGTACCTCTGACATGTCTGATAAGAAATTCCGTAGACTTTTTGAGAAATATATGATGAAGAAAGAAGCTCGATGTCAGAATTCTGAGTTGCCAGGTTCAATGCGTGACATACATGATGATAAAGCAACGGTGGTGACAAGGGCCTCAGGCGAGGATGACATTATGCGCTCCTCTGCTACCACGAGTCAGGACACTTGTATGATGTCAATAGTTGGGTTAAATGACAGGAAAAAGAGAAGAGGACGTATCCCCAGAAATGTTCAGCGCAGGAAAAAAATGCGGATAAATACAGATATAAATGTTACTTGCTTAGCTTTAGCCACTACTGAACTGAGTGACGTAGATAATAATGTTACTGATAAAACGGTGCGATCTTGTGATCTAGAGTATTTGTCCGGCCATGATTCTGCCATCCCTTGTAGTAATAAAAATGACCAGACATCATCCCCACAATGTTTAAATAGGTCAGATATCTGCTCTGAACTGGGTAGAACCAGAGGAATCGCTGAGTTACGGTACTTATCGTGTCAAAAAGAAGCTTGTGATAAGGTTTGTGTTAGTGTTAACAGCTCTCCTGTAGACAGGTTTCCTGGTACATGTAATAATACTCCCAGAACTAGTTCAAGTCTTCACGCATGTAAGGACGCTGTATATAATCACAAACCTGTTGAAGGACTACGTTCCGATTCTTGTTTAACAATCAGGTATCCAAGCGATGATAAGAAACAGAATATTGCGCCATCATTTTTAAATAGTGTACGAGCACCATGTGATCATGAGAAAGACGTGTTTGATGTGAAAACTTGTGATGGGATGACGAGTGCGCTGGCTCTAAAGATGTCCAGATATGTAGCCCTTGATTGTGAATTTGTAGGAGTTAAACCCATAAATAATAGTGCTCTCGGTCGCTGCAGTATCATTAACTACGATGGCAGTGTGCTTTACGATTCCTATGTGCGACCTGAGCAGCCGATCACTGATTATCGTACACGCTGGAGCGGGATTCGGCCACGTGACATGAAGCATGCTGTGTCTGAGTATAGTGCAAGACACTCGATCATAAACCTGCTGAAGGATAAGGTGATCATTGGCCACGCCCTGTTCAATGATTTCAGCGTCCTCAAGTTCTCTCCGCCTCCAGAGATGGTGCGTGATACATCATGCTACACGCCACTGCATGAACTTGCACAGATTTATAACACTGACCGGCCGGCCTTGAAAAAACTCACCATGGCAATATTAGGCGAGACAATCCAGCGTCGTGAACATTGCTCAGTAGAAGATGCCAAGGCCGCTCTCCAGCTGTACAAGGTCATGCAAACACAATGGGAATCTGACATTGATGCACAGAAACTGAAGATAAATGTATCAGCGCGGAAAAAAACTAAAAAACAGAATAAGAACAAAGCAAGCAAGAGAAAGCATCCCAATATAGACAATCCTGCACAGTTCAATGTCGGGTTGGTATCGGGGAATAATGTAGGTTCATTTCTAAATAGAAAGTCTACCGCGGCTTCACCATTCTTAGATGATCAATTCTGGCCTGACTTTACATAATTACTGGACATGGCACATTAACTAATTGTAATACTTTTGTTCCATGTGTACAGGGTTTATACTGACCTGTCATGGAAATCCTTGGATATCAGGGAATCAGAGAATTCAGAATCAAGGTCTAGAAATCCTTGAAATTATATATATCTCGGCTCAATTTCACAGCAAATAAACAGAAAACATTGCTGGCATCCAGTCATATTAATTTCAAAATATTCAACAGAATATGCTATGTACTGTATGTACATCGAAAAAATTTTCTTTTTTAGGATTGAAAGAGTTAATGAAACTGTCTCTACCCGCAATAGAGACCGCAGATATATAAAATGATTTTCTGTTCACAATCTTAAAAAAAGAATGGAAAAATTTAGGTTGCCACCTGGGCTAGTGAGTTTGAAATTTTAGTATCCCAGCATAAAATCTAATAGCAATGGGCCCCTGCTAATCTTCATCACAGCTGTACAGCTCATAAATAACTCAAAAGGTTTCCAAAACAGAAACATGTTAGATAATACAATTTTGAATTTGATGTACTGAGGCGCAGTTGCCGAGTGGTTAGGGAGTCGATCTCATGACTCGAATGTCGCAGGATCGATTCCAGGCCAGGCTGCCGCATTGTGTCCCTGAGCAAGGCACTTCACTCTGCGTTGTTCCAGTAAACCTGTCTGTAAAATAGGTACCTGTGAGGGCAGTGTCGGCAATACGGCAGCTGTAGTATGGTTGTATACTCCCAAAGGGAGTTGAGATTGTGCAGGAATGAAAACGCCCAATGAGTTGGGAGTAACGTTGGAGTCGGCTGAGCGCGCAAGTGGAAACAGACTATAAACCTGACCTATACCTATACTGTAGCAAATGATCTGTTGAATAATTTGGACTTTTTGATTGAGAGACATTGCTGCGTTAGGCAGAATGGCTTCCAATTAAATTATGTTCAAAATATTTCAACAGTACACTTTGTTTTCGAAACATGTTAAGTTATTTCTGAGCTGTACTATCCTGACAATGGTTGAAATTTGTGCTGAAAAGGAAGCCCAGACTGAGACCCGGGTTAGACTGTGGTCGAGTAAGAACTTCTAACATACATGTATCTAGTTGTGGATAGATAGTAAAAATTTGCAACATAATCTTTCTATCATCGATCCTAAATAAATAATATCGTTTAGGCACCAAATATAGATCTATAGATATTTGGCAGCATATTTTGTGGGAAATCGGAATTTGTTAAAATTTTGAAAACGGTGTTTGCAGAGAATTGCTGCAATTTTCAGCAATACTGCTTTCAAAATTACACCTGTTGTTGTTCAAAAGCGACTTCATTTATACGTGTACGTTGAAAATGGAGTGATCCGGTCTGTCACTGAGGTATCTGATGTCATAATTAAACACATCATTCATTAGCTGATGTCATCTAACACATCACTCATTAGCTGATGTCATGATCAAAATACATGACTCATTAGCTGATGTCATAATCAAAATACATGACTCATTAGCTGACGTCATAATCAAAATACATGAATCATTAGCTGACATCATAGTCAAAATACATGACTCATTAACAGATGTCAGAATCAAAATACATCACTCGTTAACTGACATCATAATCAAAATACATCACTCATTGACTGATGTCATAGTCAAAATACATGACTCGTTAACTGACATCATAGTCAAAATACATCACTCGTTAGCTGATGTCATAGTCAAAATACATCACTTATTAGCTGACGTCATAATCAAAATACATGACTCGTTAGCTGACATCATAATCAAATACATCACTCATTAGCCGACGTCATATTCAAAATACATCACTCATTAGCTGACGTCATAGTCAAAATACATGACTCGTTAACAGACATCAGAATCAAAATACATCACTCATTAGCTGACGTGACAATCAAAAGATAGAGGTCCATGATATAAGCGGGAAAGGTTTGACAGTAAGTGGTTGAAATGGTGTCTTTGGTGAATTTACAATTTAGTACCGTAAACAATAAACATGCTGTTGAAAATTTTGAAACTAATTTAATGGGGAGTTGAGAGCGTACAGAAATTGGGTGGAGCTTAGTGAGGAATGGGCGGAGCATGTATAGAGATGGATCCCTGTATTACAAGCCAAGTAATTCCAAAACTTCTGCTAGCTACACTTAACCCTCTGTTTGGTGAAGCAACTCAAAATAGTGTCTTATTGAATGTCCATCTACAGGTAAAGAGAAGAGTATTTTTGAAAATTTACCACTGGGATGACTGGCTCGATTATTGAGCCAGCCATTCCAGTGTAAATTTTCAAAAATATTCTTTACCTGCAGATAGACATTCCTCAAGACTACTGCAAAGGCTGGTTTTTGCCGGCTTGACCAATAACCTTTTAATGGTCAAGCCAGCCAGAACTGGTCTACAGTCATCTTGAAGAATGTCTATTTGCCAAGAGGCTATTTTTGAAGATATACCACCGGAAATCGATAAACTTGGTAATTGGTAAATTAAAAAAAATAGTCTTCTCTTGGTCTGCAAATGGACATTCAATAAGGAAATATTTTGATTTTCTTGACCAAATCTGACCACTAAAGGGTTAATATATATATATTGTAGCAAATACCGGCTAGTATATGACATGTACATTGATAACTTGTTCTCGATTCTTAGTGAAGATGTTATGAATTAAATTACGAATTGGTCAGTGTTATATCTGACACATTGTATAAAATATTTAAATGAAAAAATATTTGTATAAAATATTTACCTTCACCATTGTCTTTATTGAATTATTAAATTAAATGTTAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013520	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR037431	Domain	RNA exonuclease 4, DEDDh 3'-5' exonuclease domain	Interproscan
IPR047021	Family	RNA exonuclease REXO1/REXO3/REXO4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004527	Molecular Function	exonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0008408	Molecular Function	3'-5' exonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-