Gene detail

Detailed information of WZF218160 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF218160	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	chr3	7852586	7888294	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

WZF218160.2

CATCAAGGACGCAGATACACTGATACAGGGCACGTGAATGTTCAATGTCAAAAACACGTTCTCTGCATACACATTAGCATTATTTACTGCATATTTCAGACACTTACCTAATTATGAAACAGACCGATATGACCGAAAGACGTTGCTGTCTAAGTCAGCAACAACTTTTAATCAAATGCCCCACAAAATATTAGACAAGATTCCCATTTTGGCCACTTGAAGAAAATCTAATTTTTTCTGACTTCAGAATGGATTGTGTCAACGATTTCTAGGTTTTTGTGATATATAGTCATCTTGTACAATAATCATCCCAGCATATGATAACTTTGGTTTGACGTCAGTACATCCAGTTTAAACTAACTAACAGTTTATCAGCAACATGATGTCTGTTCTCAGGTTTTCTCTGACGATCATTATCGTGGTATGCTTTGCAGTGCCGGCCATTTCTGCACGTAGGCTAAAAAAAGGCGATTTCGCAGTATGGGAGGAGAGATTTAACAGGTTGCAGATAACTGTATTGACCGAACTGGCTGCTGAAAAGGAAAAACGGCTCACATTAGAAACACGGTTAGAAGATCGACTCCACTCGTTACAGAATGGGCTGTCATATGAAAAACAAAGAAGGACAGAATTGGAGGATCAACTTGCCAAACTAAAAGGAGAATTGAAAGATCAGCAGCTGTCATGCTGTGTGCCGCCGTCGCACAACATAAAAGTGCATGGTGACTGGTCGACATGGGGCTCCTGGGGTTATTGTACAAGGACGTGTGGAGGGGGACAAAGAAAGCGGCTCACAACATGTACCAACCCAACTCCGACTAATGGTGGTCGAGAATGTGTGGGTGACAGTCAGGACACTGATCATTGCAACAATGCAGCATGCCCACCAGTGCATGGTGACTGGTCGACATGGGGCTCCTGGGGTGATTGTACAAGGACGTGTGGAGGGGGACAAAGAAAGCGGCTCAGAACATGTACCAACCCAACTCCGACTAATGGTGGTCGAGAATGTGTGGGTGACAGTCAGGACATTGATCATTGCAACAATGCAGCATGTCCTCCACCAGGGCGGCTGAATCACGCGCGGGTTATAGCTGGCGGGGGAGGCGGTGGTGTGAATCAGTTTCGCTATCCTAGCGATGTGGCTGTCAGTCCTGCTGGTGGCAGATTCTATGTCGCGGACACACGCAATCACCGCGTGAAGATTTACACTGATGACGGCGCGATCATCAAAACATTCGGAACAGAAGGTCAGGGTGATGGACAGTTTTACTATCCTACAGGACTTGCTGTTAACAGTCACGAGCACCTCATCATAGCAGACAAGACTAATCATCGTATTGTGGTGTGTGATAGAGACGGTCAGTTTAACTATACATTCGGCACAAAGGGATCAAACACAGGACAGTTTATGTATCCATATGGCGTGGCTGTAGACATGTCAGATAACATGTATATCTGTGACCGGGCCAATAACAGAGTACAAATGTTCACGAGGACTGGTCAGTTTATCCGCCAGTTTAGCCGATACGGAACAGGAAGATTGTCCTTGCCAGCTTATGTAACTGTTGCTATGACGACTGGCCGCGTGTACGTGACAGAGGAAGGTAACAACAGAGTCAGTGTGTTTACTGCTGAAGGTGACTTTATATTTACATTTGGTACATATGGAGAGGCTAATGGTGAGATGAGGCGTCCACAAGGTATAGACATAGATGAACATGGGTTTGTCATTCTGTGTGACCGTGACAATTATCGCATTCAGGTGTTTGATGCTGATGGTGGGTTTAACTCTACATTCGGCAGTAAAGGTGTTAATATTGGACAGTTTTACTATCCTAATGGACTGGCCATCATGCAAAATGGTGACGTCATTGTCGCTGACTGGAATAATCACCGGATACAGATTGTGTCTAAATAGACCTACAGATGATGAACCTTTAGTGTTCTAATGACAGAAAGGAAGTTTATATTCAGGATGCTGTTGCTCAAAGATGTTTTTGTTTTAGACACTTGCAGCCTATCAACCGGAAATATCAAACAGCGACAAACATTTTCAACATAATAACTATTCTGTTGGATATTTTGAAAATAATTTGACTGAAATATGTTGCTGCCTATGTAAGCAACAGCTTCCCATCAGATTATGTTTAAAATATTCAGCATTTTAGCTGTAACAGTACGCTTGTCTTGAACCTGAGATTATTTCATGGTTGCTGTGGTTATGGTGTGTTGACATTATTTCATGGTTGCTGTGGTTACTGGTATGCTTAGCTTCACAATCAACTTTATGTTAGGAATAGACGTTACCAGTTTTAGCTATGCCCCGCCCATCTCTAGCTAAGCTCCACTCACACCTCGCTCTTGATGGGATCAATCGATCCCTGAACTCCCTGACTATCAATTTCGAGAAAACGATACAGGTAAGCTGTTAAATATTTTGAAAATAATTTGACTGGGTGGTGATTATGACGTCAGCCTACACGTCATGTAGTTGATTATGACGTCATATAATTGATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF17170	DUF5128	6-bladed beta-propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-