Gene detail

Detailed information of WZF031460 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF031460	SOX TRANSCRIPTION FACTOR	chr1	5004016	5070220	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

WZF031460.4

ACAATCCACAATCATACATGTCATGGGTAACTACATAGTATAACAGAACGAATTTGTTTGAATTCTGCCAACTATGACTTTATGCCCAGCACCACCCTTCCTCCACCACCCCCTCGGGGTGGAGTAGGGGGGAAGGGTGCAACCTAACTTAAATCTTGTCTTGTAGTCCCAATCTTATGGGTAACTCACTTAATAACTTTGATTTAATTCCGCCAAATGGTTTCGGAGGAGACATCCAGATGGACGGAGGCAATTTCAATATCCCCTCAGTTTTTTCAAACTGTGCGGAGATTAATTTATATCACATGTATTCCATGAATCCCACAATTTTGTCTTAAGATACAAGAAAATTATATATCATGTATTCACCTGTAATATAGCTATATCCTGATGAATATTTGTCCCCAGACAATGTTGAATGGGCCCATAAGAATTAAGCTCTGTCCAATTGAGGAATCCAATTTCTCAGTCAATCATCTGACATCATAATCAACTACGTCACATGTAGGTTAATGTCTTAATCAATTACATCATGAAGGACACGATTTACATGTAGGTCATCATAAATTCTTAATAGTCCGTCAAGTTAGCGGAAACAAGGAGGACAAGCGAGACATTTTTTCCTGCATTTAAAAAAAATATTTTAAATGCTCATTCAAAGCATACTATTATGTATGAAAGATATAAGCTTCGAGTTCATCGTCACTGCTCCAGTTCACATGACACAGTGTACTTCATGTGCCGCTACAGACAGTAGAACTGTAACTATAATCCTACATGTATAAGTGTAACGCTGGTCGATAAGGAGGTTCTTGAAAACGCCTTAAGTATGATGAATCCTTTTGGTGAAGGTTTTATTCTCAATGGATTGCAAGGAAATGAAAACAATCCATGTTGTGAATGCTTGATGCGGGGGAAATGTGGCAGTTGTCGGTGCAAGAAGATCGGTTGTAGACCATCGTGCAAGAATGTATGTTGCAAATTTCGTAACAATCCTAAGGAAGAGCAACCATCAACATCCACTATATTATCAACATCGACTGAACACATCGAGACCATCCATCCCAGTAGTCAGGCAGAACCTAGTACACTAGAACCGGAAACTGCATCTGCACACGAAGAACCCCCCTATGGGACGCCGCAGCCTGAATCACAGGCGGACAGTCAGCACCCTGAGACACCGGTGACACCATTATTAACTGAGCAGCCTAGTGAAAGCGCCGAGATGTATTCCCCACCACAAACACAGGGATCCCAGCCGCAGCCGGACCCTTCGATGATGAAGGGTGTTAAAGGTTTGAAAGAGCAATTTGCAAACATTGTGTTCGGTGCATCTTCAATGGTTCTGACACATTTTATGGTCTGGCTAGATGAGAAGATGGCTGAATTCAAGGTCAACGGATCTATGAATATGGATACTGGCTCTGTCGATACGCCAAAATGGATAAAGAATTATTCGATTTTATTCTTAGTCTGTGGAGCTCATGGAGAACATATTCCGGTAAGCGCAATTCCGCCTGCATTACAGGCGGTAAATGTTCAAGAGCAGACAACTCAGAAAATATCTACACCACTGCAACCTATGAATGTCAATCTTCCAAACTCACAGGATATCATTCTTAATAGTCAAGGACATGTTGCTTCTCAATGTTCCACACATGTAGGTGATCGTGTCCAGCCACCTGTGGTTGTAACACAGAAGTCAACGGTGATACCAATTCGGCCAGGACCACTGATGGCAAATTTGACAGTATCTGACCGGAGGGTACCGAAAAAGTTGTTGCTGCCGAAACCACCAATACCACCGAATTCAATCCGATTGCCTTCTCAGTGTGTGCATATGCCCTTGACTTCAAATCTATTACTCTCATCAACGGAACCTCTACAAACATCTACATGTACTTTGCAGAATAGCGAATCCGCAAAATCAACTCCTGATCTGTGTGCCAGTGAGCCGCCACCACAAGAAGAGCTGCTGCAAACGCAGCAAAGAAAGCGAAGGTATTCTGTTAGTGTTGAGCAAACACCACCTGACGATAAATTGACTCCAGAATTTGTGTCTAATTGCGATAGTAGTGTTATGTCTTTGACGATAAAACAGGAACCGATTGATAATTTTAGTGATACTATTTCATTTCCCAGTGATTCATTGAACATAGATGAAAATGCCATGATAAAATCTGAGCCAATAGATCAATTTTCTAGTGAAAGCGATATGATATCCGCAGCCAGTGAATCATCGTTGGTGATTGCAAGCGTGAGTTCGGAAAAAGAGGTGATGGATCCGCGTCACAGACACTATACACTTGTGCCAACTTTGCCATCACGTCGTTCCGGTTTAAGGCGTAGATCGGCCACTAAACAAGCAGATCATCTCTATGATATTGGTCTGGATATGTCGGTAGATTATGCAGATGAATCAATGGATAATTCAAATGTTGATGATGCAGATGTTGACAGTGATAGTGATGCTGGGAATGTGTTTCCTAGACATGCCACTGCAGGTCGTGATGGCAATGATTTACAAAGCTATAGCGGGTTTACCTCTGACGTGACAGAAGATGAATCATTCAGCATGCCGCAGATCGTGTCTGTCCGCTCACTTGTTCCAGCTTCCCCGGTTACGCCGTTTGTATATGTACGAGATAGAAATGTACTTGCAAAGAGTGACCGTAAGTTGTGCGCAAAATTTTGTATAAATTATTAAATACATACCGG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG
Transcription Factors Family	zf-BED

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF02892	zf-BED	BED zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003656	Domain	Zinc finger, BED-type	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR050140	Family	SRY-related HMG-box transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270	SOX TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-