Gene detail

Detailed information of WZF003820 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF003820	DNA-DIRECTED RNA POLYMERASE II	chr1	164017925	164035578	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

WZF003820.1

GCCTCGAAAATGTGCTTACACACTCGAAAACACATTACCGATGATATAAGTACATATTCACAAACTATCCAAGGCTCTGTATCCTAGATTGAACAAATCAGCCGACATTGCATTCTGAGCTTTCACAAGAATTTGAAAATGCAGAGACATTGCTAATTTCCGAAGTACAGATGTTGTTGGAGCACAGAAAGCAGCAAAATGAAAGTGCTGAGGAGGAGCAGGAGCTGTCAGAAGTGTTCATCAAGACACTCAATTACACAAACCGCTTCAGCAAATTCAAGAACAGAGAAACAATCTCCGCAGTCAGAAGTTTGTTAATGCAGAAACAGTTTCATAAGTTTGAATTGGCATCTTTGGCGAATCTTTGCCCAGAGACCGCAGATGAAGCAAAATCTCTCATACACAGTTTGGAAGGTCGATTTGAAGATGATGAACTGGTTCAGATATTAGATGACATTAAGACGAAGAGAAGCTTCCAATACTAATCAGAAGCATACATGTACACCGTCATGAGCATACATCAATCAGCGCTATAAGGATCGTCAATCAGCGCCAGGATCGTGTCTACAAGCAAAGTCTAACAATACCAACATTCGAAATTGGGTTTAAGTTCAATATGTTTTGTAGTAGCTGCAACATGGGTCCAAAGCATTAACCCTTAATGGTCAAGGCTACCAAAACTGGCCTCAGCAGTGGTTTTGACCAATGCCCATTTTCACGCAAAAAGACTGCTTAGCCGTTTAATGGTCAAGATTTTTAAAAAAAAATTTCCTCAATGAAAATTTATCATTGGTATTCCAGTGGTAAACGTTAAAAAATAGTCTTATATTTGCCTACAAATGGACGTTTCTCATGACCACTCCAGAGGCCGGTTTTGGCTGGCTTGACCATTAAAGGGTTAATAAAATTTACCACTGGAACGACTGCCCCGATAACCAAGCCAGTCAGTCAGTCATTCCGGTGTTCAATTCTTGACCTGCAAATGGACATTGATGAAACGTGTTGTTTTTCCTGACCGTTAATGGGTTAACCTGATGCTAATGGATGCAGTTGCTATGGCAACTAGCTATTAACTTGCAGCAGTATCATTTAATAGCCGAAAAGGTTTTCATAACAGAAACATGTTAGTCAGAATATTCTGTGGATTATTTTGAACGTAATTAGATTCTTGCAATCCAATTATGCTCAAAATATTCAATAGTACCTGATGTGTTGTATTTTGTTTTGGAAACATGGTAAGTTATTTCTGGCTTCTGCAGTGGTCTTGAAAAATGTCCATTTGCAGACCAAGAGAAGACAATTTTTGAAAATTTATCACTGGAATGACTGACTCGATAATCGATAAAATAGTTTTCTGTTGGCCTGCAAATGAACATTTTTTATGAGAAAATTGAAATTTTCAAAATATATATACAGTATACCAGTAGATGTTCACCCTTTAACTTAAATTTTCTATGAGAAAATGTTCGTTTGCAGGTCAAAAATCCCTCGGCATGAGATCTATCACATGTGCCATCATTCATGGTTCATGCAATATTACCCCTTCAACCCTCGAATTTGTTCAAGAAAATTTAAATCTTCTCATTGAAAATCTCCATTTGCCAACCAAGAGAAGAAAGTTTTTCACTCAGGGGTGACTGTCTAGAATAAAAAATTGTTTTGTCTTGATCTGCAAATGGACATTACTTGTACCACTGTAGATCTTTGGCCGGCTTGAGTGTTAATTTTGACAGTCACCTACAGCACTGGGGTAGAAGAGAAAGGATTGGGATTTCTAAGGAGTGAAAGGAAAATTTGGGTCAATGCAATGTAGGGATTATTAATACATGTAATGTTCTAGTTTCCTTATTAAAAGCAATAATAAACATTTAGCGGGAATATTTCATATTATTTTCCGCTATTTAGAGCAAATAATTATGTTGAAATCACTTTGGAACGAGGTACATATCATGCTGTAACGATTTAAAGATCAAAATTTGTTGAAAATGTCGCAATTCTCGCTTAGCGAATGTCCATTTGTAATCCAAGAGAAGAGTATCTTTGAAAATTTGGCACTGAAATGATTGGCACGATTATCAGTCATTCCTTTGCAGACCAAAAGAAGACTGTTTTTGAAAATTTACCACGGGAAGGACTGGCTCGATAACCGAGCCAGTTAATCCAGTGGTAAATTTTCAAAGATTGTCTTCTCTTGGACTGTAAATAGATATTTCTCAAGACCACTGCAAAGGCTGGCTTTAGTCGGCTTAGACTATTAAACCATTAGTGGTAATTAGTAAATTAACCCTTTAACACTCGAGGTGGCCAAAAAACACTTTCTGCAGTGCTCTTGACAAATGCTCATTTAATAATAACCCAGCCAGTCATTTCGGTGGTAAATTTTAAAAAATAGTCTTCTTTTGGTATGCAAATGGACATTTTCTATGAGATAATTAGTTTTCCTGAAAAAATTTGCAAGTTAACCTTTTAACCCTCGAATTTATTCAAGAAAATTTCAATTTTCCCAGAAAATGTCCATTTGTATACCAAAAGAAGACTATATTTTTGAAAATTTACTGCTGGAATGACTGGCTTGGTTATCGAGCCAGTCATTCCAGTGGTAAATTTTCAAAAACGGTCTTCTTTTGGTCTGCAAAGGGACATTTCTCAAGACCACTACAGAAGCCGTTTTTGGCTAATATGAGTGTTAAAGAGTTAAATAAATGGTTAAGACATACAGTGTAACTTGTTAAAATAAATTTTCTTGTCATGTTTTATCTCACATGCATAGCAAAGGTGAGACAATAGGTATCACTTTTCCGATGGCAGCGGCGGTGCATCTAGCAAATCGCTGCCTTTTGTTTCAGACATGGTTGTGCCCATAGTTAGTCTATCCATAGAACACTCATGGCCCTCTCCAAGGTAGAATTAGATTTCAGTATTTTTGCACCGGATCAATATTTCCAATGTAATTAATTTTTGTTGTTAATTCTATTATGGAGTTGAATAAATTGACATGTTAATAGTCCCAATAGAGTTTTATTTCTGATAAAAATATATAAATCTGTGTCTGCTCAATTCCTCTTCCAATTACCGAAAGAGAATTGTGTGACTTTAGCGAGGCTATATATGCTGCTGATCAATCTGCTTCAGCTAGTCAGTGATACCCGGCCATGCACATTTGTGTTTTACTGAACTCCCGTCATTGGCAGTCGGGACAACTAGTGCCATAGTGAAGGTATGTGCATGAGCACTCAATGGTTATACTAATTCTATGGTTATGCCTCTCAGAACTAAGCTTTAATACATGGTTGCCTATGCTGATAGGAATATGCATGATGACATAGGGCAATGTCATTAGGGGGTCACAAGGTCAAAGGTCATATCATTGGTCATGTTGGTACATGTACAAAACATTAGCTTTTGAGTTTAGCTAATCTCGGCTTATATCATGTGCATATTTCAGTATTGGAACTAAACTTGCATATATGGTTGACTATGCTGCTAAGAATCAGTGTGATTTAGCTCAAGATCAAAGTCAGTGACATCAGCAATGAGGAGAACAGACCAGACATTTAATTCCGTGAAATTCTTGTAGGTGATTTTTATCAACAAGATATAAGTTTGGACATTTAAATCGGCCCACATCATCCATCTGTACATATTAAGCAGTATTTTATTAGTATTGTATCATTTCTCATTTTATGTTCATGTAAATAAACCATTAAGAAATGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03874	RNA_pol_Rpb4	RNA polymerase Rpb4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005574	Family	RNA polymerase subunit Rpb4/RPC9	Interproscan
IPR006590	Domain	RNA polymerase Rpb4/RPC9, core	Interproscan
IPR010997	Homologous_superfamily	HRDC-like superfamily	Interproscan
IPR038324	Homologous_superfamily	Rpb4/RPC9 superfamily	Interproscan
IPR045222	Family	DNA-directed RNA polymerase II subunit Rpb4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21297	DNA-DIRECTED RNA POLYMERASE II	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006352	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0030880	Cellular Component	RNA polymerase complex	Interproscan
GO:0031369	Molecular Function	translation initiation factor binding	Interproscan
GO:0034402	Biological Process	obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	Interproscan
GO:0044237	Biological Process	obsolete cellular metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-