Gene detail

Detailed information of Sda_chr09g02596.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr09g02596.1	RNA-BINDING PROTEIN RELATED	Sda_Chr9	194069204	194112913	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr09g02596.1

ATGGTCCAAGAAGCCCTATCGCTCAATCAAGAATATAAGCCTCCACTAGATTACAAGCCTCCAATGCAGAGAGTAAACGACAAAGTGATGATTCCTCAAGATATGCATCCAGAAATTAACTTTGTTGGACTTCTGATTGGTCCAAGAGGAAACACTCTGAAAAACCTTGAGAAAGATACTGGTGCCAAAATTATCATTCGAGGTAAAGGATCAGTAAAGGAAGGAAAGATAGGCAGAAAAGATGGACAGCCATTACCCGGGGAAGATGAACCACTACATGCTTACGTCACTGGAAGTAACCCGGAGAACGTGCAAAAAGCTGTCGAAAAGATTAAGGAGATTATACAGCAGGGTATTGAAGTTCCAGAAGGTCAGAATGATCTCCGACGACAACAGCTCCGAGAATTAGCGTTACTTAACGGCACACTGAGGGAAAATGACGGATTAATGAAATTGAAGCAGTTACAGCAGGCACAAACCATAGTGACAAACACTATTATATGTTCAGTGTGTGGTGGAACTGGTCACATAGCACAGGACTGTAAAGAAAAGCGCCCTGGAGACACATACAGGATGCAGCAGACAAATATACAGACACCTACAGATAAAGCAAAAATGGACAGTGAGTATATGTCACTGATGGCTGAGCTCGGAGAAGGTCCAGAACCATCAAGCAAACCAGATAACATGCAGCCACAACGGCAACATGGTCACCATAACGACAGGTTCCAAAACTCTTCACAAAATTTCCAACAAAGACAACATTTTCATCCACCACCAAATCCAATGGGTGTAGATCCACCATGGCAGAACAATAACAACATGAGAACACAGGGTCACGGCGGAAACTCAGGATCTCAGCATCAAGGGTTCCACAGCCAGCAGCACGGAGGAGGTAATCGTATGCACAATGCACCTCCATCACAGCACCACGGCCACCAACAGAGCGGGTTCCAACCCAGTCCAGTCTCGCCACCATGGAATCCTCCATTCACCCCGGTCTCACAAGCACAGGCAAACAGACAGAATCCTGGACATGGTTTGCATCCTCCACCGCCACCCCCAATGGGCCAATCTGGTGGAAACACAGCACCCTGGTTACAACAACAACAACCTCAAAACTCATTTTCACCGGTCGCACCGCCTCCACCCACCACATCATCTGGAATACCGCCATGGCAGACATCGAGCACGATGCAACAGTCGAGTAACGTGCCGCCATGGCAGGTCCAATCTCAACAGCAGCAATCAATGCATGTGGTAGCGCCCCCTCCACCACCTAGTCAACAACACGGCGGATATAATAGTCTAGGTGCCCCTCCACCACCACCACCAGGTGGCTACGACAACCATTTCGAGTTATTACATCCTCCCAGCATGATGAAGCAGATTGTTAAAGGACTCGCTGTATTAGCATCATCGGCTGTCGTGTTACCATACAGTGTCGCTATATTATGTAACATTCTATATGGATGGCCTCTGTCTAAAGATAAGCTGATGAAGCTGTTGCAGCCACACAGAGTTATTGCACTAAATAAAGCTGTACTGCAGAAGATAATGCTGATTAAATACACACAGTTATACCTAAGATACCGTTCATTCTACAAAAACTGTGAATCCATTTATCTTGTTAAGGACATTTCATTTGGGAGAAATTACAAGACATTAGACTTGTACCATCCAGAAGGTCCACGTGACCTGGCGCCAGAGAAGCCAGTCGTTGTGTTCATTTATGGAGGTGCTTGGGGTTCTGGAGATAAGAACATGTATGGACTTGTGTGCTCTAACTTAGCTAATGAGTTAAAAGCTCTCGTCTGCTGCCCTAACTACTCGCTGTTTCCTCAGGGGTATGTTGATGACATGATTCAGGATGTGGTAGACTGTCTCATCTGGGTCCAAGAACACATTCACAGATATGGAGGAAATAAGGACAAGATTCTTCTTATTGGGCATTCTGCTGGGGCCCATCTGTGTTCGATGGCTCTTCTTGAACTAAGACATGGTGAAATTGCAGAAATTCTCAGGAAGCAGCAAATTGAAGGTTCGATGGCTGAGTCGCTCAAATTGGACGAGAGCTACTTTAAAGTGGGATCTCTTGTTGGTGCTAAGGCTGATTCAAGTGGCGGACAAAGTCCAGGTTCATCGGGCTCATTCTGTCTGGTGAATGACAGTGATGAAAAATCAAACAATTTTGAAGTTGTTAATTCTGAAAAATGTGATAATAATGCTGAAGATAGACCTGATGGGGGAAAGGTCGTAACAGAACTTATGGAGACTCCGATGACAGATAAAGGTTCCGAACATGTTCAAAGACAGGAATCGGAGGAGTCCGAGAACGATTCAGTTGTGACAGTGAAACAAACCGCATCAACCGATGGACAAAGTGTTTTAGAGTGCTTGAACAAATCTGTGAAGGGATTCATTGGTCTCGCTGGAGTTTACCATATACAGGATCACTATCGACATGAAGGAAAAAGAGGTATAGAAGAATTATCAGCGATGGCTCGGGCTATGTATGGCGAGGAACACTTCGATAGGTTCTCACCTACATCTATTATAGGCAAATTAAAGACATCAATCAGCTTGCCACGTCATGTTTTACTTCACGGGACTGAGGATATAATAGTGCCATTAACTTCAACAACAAAGTTTGGAGAGTTACTAGCTGAGGTTTCTCCGGACGTCGCGATTCGTATAATTCCTAGCTGTGATCACTATGAAGTGATTGATCTGGTGTTCTTGGCATTAAAAGAGTTAACAGGTTTGCATCTACCATCTAATGCCTCTCTGGCTGACGCAGATGCGTCCTGGCATGTGCAGCCGCCTATATGGCTAAAATGTTGTTTCTTTCAAGATGATCCTATGTTTATGTAG

Transcript

Sda_chr09g02596.1

GTCGGACAAGTGACGACAGAGTAACAGGTAGTAATGAGTAGAAATGTTAACTGTCCGTATGTTCTGATGACATTCATCTTAACACAGGAGATTGTTTCAGGTCGCCGTCTCCAGAACCGATCTATAACAATGAAGGCAAAAGGCTGAACACGAGAGAATACAGAACGAGGAAGAAGTTAGAAGATGACCGACATAAGATGGTCCAAGAAGCCCTATCGCTCAATCAAGAATATAAGCCTCCACTAGATTACAAGCCTCCAATGCAGAGAGTAAACGACAAAGTGATGATTCCTCAAGATATGCATCCAGAAATTAACTTTGTTGGACTTCTGATTGGTCCAAGAGGAAACACTCTGAAAAACCTTGAGAAAGATACTGGTGCCAAAATTATCATTCGAGGTAAAGGATCAGTAAAGGAAGGAAAGATAGGCAGAAAAGATGGACAGCCATTACCCGGGGAAGATGAACCACTACATGCTTACGTCACTGGAAGTAACCCGGAGAACGTGCAAAAAGCTGTCGAAAAGATTAAGGAGATTATACAGCAGGGTATTGAAGTTCCAGAAGGTCAGAATGATCTCCGACGACAACAGCTCCGAGAATTAGCGTTACTTAACGGCACACTGAGGGAAAATGACGGATTAATGAAATTGAAGCAGTTACAGCAGGCACAAACCATAGTGACAAACACTATTATATGTTCAGTGTGTGGTGGAACTGGTCACATAGCACAGGACTGTAAAGAAAAGCGCCCTGGAGACACATACAGGATGCAGCAGACAAATATACAGACACCTACAGATAAAGCAAAAATGGACAGTGAGTATATGTCACTGATGGCTGAGCTCGGAGAAGGTCCAGAACCATCAAGCAAACCAGATAACATGCAGCCACAACGGCAACATGGTCACCATAACGACAGGTTCCAAAACTCTTCACAAAATTTCCAACAAAGACAACATTTTCATCCACCACCAAATCCAATGGGTGTAGATCCACCATGGCAGAACAATAACAACATGAGAACACAGGGTCACGGCGGAAACTCAGGATCTCAGCATCAAGGGTTCCACAGCCAGCAGCACGGAGGAGGTAATCGTATGCACAATGCACCTCCATCACAGCACCACGGCCACCAACAGAGCGGGTTCCAACCCAGTCCAGTCTCGCCACCATGGAATCCTCCATTCACCCCGGTCTCACAAGCACAGGCAAACAGACAGAATCCTGGACATGGTTTGCATCCTCCACCGCCACCCCCAATGGGCCAATCTGGTGGAAACACAGCACCCTGGTTACAACAACAACAACCTCAAAACTCATTTTCACCGGTCGCACCGCCTCCACCCACCACATCATCTGGAATACCGCCATGGCAGACATCGAGCACGATGCAACAGTCGAGTAACGTGCCGCCATGGCAGGTCCAATCTCAACAGCAGCAATCAATGCATGTGGTAGCGCCCCCTCCACCACCTAGTCAACAACACGGCGGATATAATAGTCTAGGTGCCCCTCCACCACCACCACCAGGTGGCTACGACAACCATTTCGAGTTATTACATCCTCCCAGCATGATGAAGCAGATTGTTAAAGGACTCGCTGTATTAGCATCATCGGCTGTCGTGTTACCATACAGTGTCGCTATATTATGTAACATTCTATATGGATGGCCTCTGTCTAAAGATAAGCTGATGAAGCTGTTGCAGCCACACAGAGTTATTGCACTAAATAAAGCTGTACTGCAGAAGATAATGCTGATTAAATACACACAGTTATACCTAAGATACCGTTCATTCTACAAAAACTGTGAATCCATTTATCTTGTTAAGGACATTTCATTTGGGAGAAATTACAAGACATTAGACTTGTACCATCCAGAAGGTCCACGTGACCTGGCGCCAGAGAAGCCAGTCGTTGTGTTCATTTATGGAGGTGCTTGGGGTTCTGGAGATAAGAACATGTATGGACTTGTGTGCTCTAACTTAGCTAATGAGTTAAAAGCTCTCGTCTGCTGCCCTAACTACTCGCTGTTTCCTCAGGGGTATGTTGATGACATGATTCAGGATGTGGTAGACTGTCTCATCTGGGTCCAAGAACACATTCACAGATATGGAGGAAATAAGGACAAGATTCTTCTTATTGGGCATTCTGCTGGGGCCCATCTGTGTTCGATGGCTCTTCTTGAACTAAGACATGGTGAAATTGCAGAAATTCTCAGGAAGCAGCAAATTGAAGGTTCGATGGCTGAGTCGCTCAAATTGGACGAGAGCTACTTTAAAGTGGGATCTCTTGTTGGTGCTAAGGCTGATTCAAGTGGCGGACAAAGTCCAGGTTCATCGGGCTCATTCTGTCTGGTGAATGACAGTGATGAAAAATCAAACAATTTTGAAGTTGTTAATTCTGAAAAATGTGATAATAATGCTGAAGATAGACCTGATGGGGGAAAGGTCGTAACAGAACTTATGGAGACTCCGATGACAGATAAAGGTTCCGAACATGTTCAAAGACAGGAATCGGAGGAGTCCGAGAACGATTCAGTTGTGACAGTGAAACAAACCGCATCAACCGATGGACAAAGTGTTTTAGAGTGCTTGAACAAATCTGTGAAGGGATTCATTGGTCTCGCTGGAGTTTACCATATACAGGATCACTATCGACATGAAGGAAAAAGAGGTATAGAAGAATTATCAGCGATGGCTCGGGCTATGTATGGCGAGGAACACTTCGATAGGTTCTCACCTACATCTATTATAGGCAAATTAAAGACATCAATCAGCTTGCCACGTCATGTTTTACTTCACGGGACTGAGGATATAATAGTGCCATTAACTTCAACAACAAAGTTTGGAGAGTTACTAGCTGAGGTTTCTCCGGACGTCGCGATTCGTATAATTCCTAGCTGTGATCACTATGAAGTGATTGATCTGGTGTTCTTGGCATTAAAAGAGTTAACAGGTTTGCATCTACCATCTAATGCCTCTCTGGCTGACGCAGATGCGTCCTGGCATGTGCAGCCGCCTATATGGCTAAAATGTTGTTTCTTTCAAGATGATCCTATGTTTATGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan
PF20434	BD-FAE	BD-FAE	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR004087	Domain	K Homology domain	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR045071	Family	KH domain-containing BBP-like	Interproscan
IPR049492	Domain	BD-FAE-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11208	RNA-BINDING PROTEIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0048024	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-