Gene detail

Detailed information of Sda_chr09g00404.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr09g00404.1	XANTHINE DEHYDROGENASE	Sda_Chr9	29724891	29797209	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr09g00404.1

ATGAAAACCGTTTGGGCGGTTCAAAGAGGGGTGGTTGATTACCAGAAACACAGAGAAGGGAAAGCTGATGAGGGAAGGGTGGAATTTTACTTGAATGGGAAGAAACACAGAGTTGGTGAACCATTCCACTTGACGTCTAGCTTGGCTGACTATATTAGGTATGGAGCCAAGCTACGTGGAACAAAGACCATGTGCCGTGAGGGAGGATGTGGGGCCTGCTCTGTGTTTGTTACAAGAAATAATGAAAACATGACAATAAATTCTTGCTTGTGCCCACTCTATAGTATTGATGGCTGGTCTATTACTACGACAGAGGGGTTGGGTTCGAAGAACAGAGGCTTCCACCCAATACAGAAGAGGATAGCTGAGATGAATGGCACACAATGTGGCTACTGTACACCGGGGATAGTGATGAATACTTACGGGTATCTAAAGAAGAATTGTGAGCCTACATCTGCTAGCATGGATATAATGTTAGATGGAAACATTTGCCGATGCACAGGGTACAGACCAATTCTTGATACACTTAAATCATTTTCTAAAGGTGGTCAGTCTGAATGCATTGACATTGAGGATATGGGGAACTGTTCCCAGAAATGTTGCTGTACTCCTGCAGATGAGTCTCCGTATGTTTCTGATGAGACTACAAGCTGCTACAGACCTACTAACCTCAGTCAACTTACCTCGTCAATGACAATGATTAATCACTACAAACTTGTATGTGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCGGGTAAGGGTAATACTGGATCGGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGCGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGTAATACTGGATCAGGTAAGGGCCAGAACATATTATCTCTTGTATGTGGTAATACTGGATCAGGTAAGGGCCAGAACATATTATCTCTTGTATGTGGTAATACTGGATCAGGTAAGGGCCAGAACATATTATCTCTTGTATGTGGTAATACTGGATCAGGTAAGGGCCAGAACATATTATCTCTTGTATGTGGTAATACTGGATCAGGTTTGATACACAAAGATGACAGACGAACTGACTACATTGATCTTCAGTATGTTAGAGAGTTTTATGACATAAAGATATCTGACGAGGAAATGATATTCGGCTCTAACCTGACTATAAGCTCACTCATCGGGCACCTGAGGGAGCACCAATCAAAACCGGGTTACTCATATTACGAGCAGATGGCTATGATGCTCGAGTCCATTGGAAGTCGCCAGATTCGTAACATTGGAACATGGGCTGGAAATTTGATGTTGAGATCATCAACTAAATTTGTTTCTGATGTGCTCCCTGCATTCGAAGCAGCTGGTGCTGAAATTCTAATATCAGCAAACAACGGACATACTAAGCAACACTTCAGCGGTGCACTTGTTCTAGATTCTAACAGAAATACTGAATGGATACCTGCAACCAAATTAATGCATCTCGAGTCAGCCAAGGACAGGATACTAATATCTGTGAAATTACAACGATTCCGAGATCAGGAAGTCTACAGAACTTACAGGGTTGCACCTCGACAGCAACTGTCTTTGGCTTACATAAGTGCTGGCTTCAAGTTTTTATTTGGTAATAATGACAGTTACCAAATAAATGGTAAACCAGTTGTTACTTTTGATGGTCTTGGTGGCTCAAATTTTATACTTGAGGTTTGTGAGAAAATTGTGCCAGAGAGAATGAAATCTGGTGCATCATCTATAGAACGCCCAGTATCATCAGGCAGTCAGGTTTATAAGGTATCAGAACCGAGGACAGACATCATTAAGCCAGAAGCAGAAATTCAGGCCAGCGGGCAGGCTCAGTTTACTGATGATATACCTACCTGTGATAACGAGCTGCAGGGGGTTCTTGTTCACACAAGTGTAGGAGCGGCAAAGATAGACAAGATAGATGCAACAGACTCTGAGAAGGTACCTGGATTTGTTAGATTCTTGACAGCTAAGGACATCCCAGACGGGGTGTTAAACTCCATCATCCATCATCCTAACACATGGAGTTACCCACCAGAAGAGCTTTTTGCCTCTTCATATTCACCGTATGCTGGTAAGGTGGTGGGACTCATTCTTGCAGACAACAGGGAATCTGCCGTAGTAGCTGCTAGTAAAGTGAAGATCGAATACGGAGAAAGAAGTAAACCTGTCCTCACGATAAAGGATGCAATAGCTGCTAATAGATTCTGTGAGATTCCGATTAAGCCATTAAATATTGGAAATGCTGATGAAATCTTTAAAACAAGTGAGAAAATCGTTGAGGGTGAAATCAACCAGAAGGGTCTGTTCCATTTCTACCTGGAGAATCAGGTGGCGCTAACCATCCCCATGGAAACAGGATTCGAGTTACACGTACCGACTCAGCTTCCACAGTTTCAGCAGTATTCAGCTGCGCAGATAACCGGAGTTCCTGTTAATCATGTACAGATGAAGGTGCTGAGAGTTGGAGGTGGTTTCGGCGGGAAAGGAGTCCAGGTGTTACCTCTCGTAGCTTCCAGTGCTCTCGCTGCTAAACTAATGGACAGGCCAGTTAGAGTTTGCATCTCTAATGAGAGGAATATGGAGATGGCTGGTGGCAGATTTCCATTCTATGCAAAATATAAAGCTGTCTATGATGAAGAGGGAAGAATTTTAGCCTTAGATGCTGATTTATATATGGATAACGGATGGAGTAAAAGTGGAGTCGGAATATTCTCGCTGATGAAAACACTGAAAGGCGCTGATGGAGGATATGCTATCAAGAATGTCTGCATTCGTCCACATCTTGTAACCACAAATACAGCCACAAATGGCCCCATGAGAAGTCCTTATTTTTTTCCTGCTACATACTTTATAGAAACCGTGCTTGAGCATGTTTCACACGATCTTGGAAAAGAATCAACGTTAGTAAGAGAAAAGAACTTAACATCAACAGGACAGACAACATTTGAAGGAGATTTAATAGAAAACTGTTCCTTACCTCGCATATGGAGTGAATTGATGGAGAAATCAAGTGTTCTGAAAAGGCTGGAACAAGTCAAGGAATATAATACCTTGAACACATGGAAGAAGAGGTCCATCATCATGATGCCATTGAAGTATAAGATAATTCTAGGAGCAAAAGCAATGACGGGGACGGTAGCCATCTATCATCAGGATGGAACGGTTAATGTATCGACTGGTGGCGTAGAGTTAGGCCAGGGATTAAATATAAAGGTAGCACAGGCTGCAGCCTACACACTCGGAGTCCCTGTTGATAGTGTTAGAGTCCTTCATAATGATACGTTCACGTCACATGATAACGGTGTTACTGGAGCCAGCTCTACCAGCGAGATCGCCGCCCAGGCTACAATGGATGCTTGTAATGAATTAGTGAGGAGGATGGAGCCAATAAGAAGCCAGAATCCAGGTGCTGATTGGATATCATTGGTTGATAATTGTGTCAAGAACAAGATTGATCTGTCTGCAAAGGCACTGTCTTATGGACCAGATGTATCCTACTTCATATTCGGAGCGTGTGTTACAGAATGCGAGGTTGATGTCCTGACAGGAGAGAACGTACTCAGACAGGTGGACATGGTCTATGATTGCGGCGACAGTTTGAATCCACTTGTTGACATCGGACAGCTTGAGGGAGCTTATATGATGGGTGTTGGTCAGGCGTTATTGGAAGGGATCATACATGATGAAGAAACTGGTCAGATCAAAAACAACGGAACATGGAATTATAAAGTGCCAATGTCAAAAGATATTCCAGTCAAGTGGAACATAGAGCTGTTATCTGATGGTCCAAACCCGGTGGGAATCAGAGGATCAAAAACTGCTGGTGAACCCGGTCTTCTGTTTTCTATTGGAGCTCTGATGGCGGTGAGAAAGGCTGTTGCTGCAGCACATGAAGAGTTGACTGGAGAGCGGGTATTCAACACTGTTGAAACACCGTACACAGTGGATAAAGTTGGTCTACATTGTGGTACAACCATTAACCACCTGACACTGGCCCCTGTATAA

Transcript

Sda_chr09g00404.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00941	FAD_binding_5	FAD binding domain in molybdopterin dehydrogenase	Family	Interproscan
PF01315	Ald_Xan_dh_C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	Domain	Interproscan
PF01799	Fer2_2	[2Fe-2S] binding domain	Domain	Interproscan
PF02738	MoCoBD_1	Molybdopterin cofactor-binding domain	Domain	Interproscan
PF20256	MoCoBD_2	Molybdopterin cofactor-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000674	Domain	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Interproscan
IPR002346	Domain	Molybdopterin dehydrogenase, FAD-binding	Interproscan
IPR002888	Domain	[2Fe-2S]-binding	Interproscan
IPR006058	Binding_site	2Fe-2S ferredoxin, iron-sulphur binding site	Interproscan
IPR008274	Domain	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Interproscan
IPR012675	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR016166	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR016169	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR016208	Family	Aldehyde oxidase/xanthine dehydrogenase-like	Interproscan
IPR036010	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR036318	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR036856	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Interproscan
IPR036884	Homologous_superfamily	[2Fe-2S]-binding domain superfamily	Interproscan
IPR037165	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Interproscan
IPR046867	Domain	Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11908	XANTHINE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051537	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0071949	Molecular Function	FAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-