Gene detail

Detailed information of Sda_chr08g03106.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr08g03106.1	BETA-HEXOSAMINIDASE	Sda_Chr8	224253342	224294245	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr08g03106.1

ATGTTGATAAATGACGATGACGACAATAATGATGACGACGAAGAGGATGACGAGGACGACAACAATGATGATGATGGTGGCAACGGTGATGATGATGCTGACGATGATAATGATGACGATGATGATGCTGGTGATGATGATAATGATGTTGATGACGAAGAAGATGACGATGATGGCGACATATATATATTGCCGTCAATGTGTATAGACCAAGGTGGCATTAACTATATGTCACGGCATTTGAGAATCGAATATGACGTGCTTGACAACTTCAGGGACATGCTCTTTAGCTACTCCATTCAACTGACTCTAAAAAACACCGGAAACCTTCCGATCAGGGGAGATGACTGGAAAATATACTTCACTCATTCCCGTATGTTGGAACCTGATCATTTACCGGATGCCAAAAGTCACACACTCGATGACTACAATGTCAAGGTCAGTCACGTTCAAGGCGGCCTGTTCACATTAGAACCTACGGGTGGTTTCAAGGACATAGCGCCTGGAGAAAGTAGATACATCCAGTTTCTCGGTGAAAACTGGGCAGTTTCCAGATCGGATGTGTATCCAAACTGGTATCTGGGCGCCGACGGCCTTGAACCAAAAATTATTGAAAACACCGCAGACGAGAAACTGCAATTTGTTGGTGACTTCGACAGGGTTGAGAATTGGAAAAGATACGAGTGGAAGAACGAAGAAGGTGAAGGTCATGATGCGTATGACCCTTTGACCACTCGCGCACGACACAGTCTTCATGACATACCTAATATGAGAAGGGCTCCTCTGAAGGTTATACCGACGCCTCGTCATATATCGTTCGACGAATCAAAAACAGTGTACCTTGGTACCACGGACTGGCTCATAGTAGCGGGCAATGATGTCATGGAAGAGGCACGATTTCTATCTCAAAGTTTGAATATTGGTGTCACGACGCGAATACTCAGCAGTCGGTATATCAAATTGGCGAAGGAGAATATAGAGAATACTGACCGTATACGTGAAGATTTGATGAACGAGGCCTATCAGTTAGACATTGATCCAGCAGTTGAATCCATCACCATCAAGGGTCGTACATCGGCTGGGATTTTCTATGGGATACAGTCACTTCTGAATGCAATGGATGGAAACAGAACTATATGCGCACTCTCAATACGTGACGCCCCCAGATACGGATACCGGGGCTTAATGTTGGACATAGCCCGGAACTTCAGAACAAAGTCTGAGATCAAGAAGCTTATTGGAATCATGGCTTCATACAAACTCAACATGTTCCACATACATCTGACGGATGACGAGGGGTGGAGGATACAGATTCCGGGACTCAACGAGCTAACTGAAGTTGCAGGGAGAAGATGCCATGATCTTACGGAGAAGTCATGTCTCCTCCCCCAGTTTGGCTCCGGACCACGCTCTACATACCCCGGTTCTGGATACCTCACGATGAAAGATTACATGGAGATACTACAACATGCGAAGATCCATCATATTCAAGTGATACCGGAAGTTGATATGCCTGGACACGGGCATGGTTCTATAAAAGCTATGGAAGCCCGGAGAGACAATATGATCAGATCTGGGAGACAAAAAGATGCATATACGTATCTTCTCGCTGAAGAGAACGATCCATCGAATTACAAGTCGATTCAGATGTTTACTGATAATGCTGTTAATCCGTGTATGAACTCTACAATTAATTTTGCCCGGCATGTTATATACGCTCTGGCTCAAATGCATCAGAATATTATGCCGCTTAAGGTATTCCATTTTGGTGGAGACGAGGTTGCCAAAGGGGCGTGGGAAAATTCCACCGCATGTAAGGAGCTGATCCGGAATGATCCTACTATAAGTAACACAAAACAGCTGAAAGAATACTTTGCGAAACGTATATCTGATATTACCGCGGAGCTTGGCCTCGATATGGCAGCATGGGAAGATGGATTCATGGAATCGGGGACGGGTCGTACTTTTGACAGAACCAGAATGAACAACAGGAACATCTATGCATATGCATGGGACAACGTCTGGGAATGGGGACAGGCTGGTCGAGCATATACCCTTGCCAATGCCGGATACAAGGTTGTCATGGCGCAGGCTACACATTTGTACTTCGATCACCCGTATGAGCCAGACCCAGAGGAACCCGGTCTATACTGGGCTCTCAGGTACACCGATACGAAGAAAACATTCAGCTTCATGCCTGGGAACCTGTACGCTGCCGCTGATGTGGACAGGGCCGGGTACCCCATCGACGATGAGAGACTCTGTGGTGAACGCGGGAATAAATGTCCGCCACTCAACAAGCCCAATAACATAGCAGGAATCCAGGGACATATGTTTGGGGAGCTGTTGCGTACCCCAGAACGGGTGGATTTCATGCTATTCCCGCGGTTTCTCGCCCTGGCGGAGAGGGCGTGGCATGAATCTGACTGGGAGCGAGATCAGAACAACGCAACCAGGAAAGAATCATTGGACCGCGAGTGGTCGTCGTTTGCAAACACGCTAGGTCACAGAGAACTGGGTCGATTAGATCGTCTCGGCGTTAAATACAGAATACCACCACCAGGGGCCAAGATCGTTAATGGAAAGTTGGTTGTAAATACAGAGTTTCCGGGACTTGTTGTTGAATACAGTAACGACGGCGGTGATACGTGGTGCCATGCGTCTGGGGAATCGGCCATTCAGTCAGGCAAGACGATTCTGCTGCGTACAAGATCTGGCGACGGGAGCAGAACAAGCCGCGTTGTTTCACTCTTTGGGGTTCAGAACGAACAGTTCACTGAGAAGTCCGAAGCCCCATCTCAACAACATCAGTACATACGTCATCTCGCTACCAATGAAGACGCACCAGACCTGAGTGAGGAGGAGATTGCAGAATTCAAAGAAGCGTTCAGTTTGTTTGACAAAGATGGTGACGGCACAATCACGACAAAGGAACTCGGGACCGTGATGAGATCAATGGGTCAGAATCCTACCGAGGCTGAGCTCAAAGATATGATTAACGAAGTGGATGCTGATGGAAACGGAACAATCGACTTCCAGGAGTTCATCGTGATGATGGCGAAGAAGGCGAAGGACGTGGAAACGGACGAAGAGCTGCGGGAAGCATTCCGGGTTTTTGATAAAGACGGAAACGGCTTTGTCAGTGCCGTAGAATTGCGCCAAGTGATGACGAACTTAGGCGAGAAACTTACCGATGAAGAGGTGGATGAAATGGTCAAAGAGGCGGATGTTAACGGTGACGGACAAGTAGACTATGACGAATTCGTACAGATGATGACGGGCAAGTAG

Transcript

Sda_chr08g03106.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00728	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan
PF02838	Glyco_hydro_20b	Glycosyl hydrolase family 20, domain 2	Domain	Interproscan
PF03173	CHB_HEX	Putative carbohydrate binding domain	Domain	Interproscan
PF03174	CHB_HEX_C	Chitobiase/beta-hexosaminidase C-terminal domain	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR004866	Domain	Chitobiase/beta-hexosaminidases, N-terminal domain	Interproscan
IPR004867	Domain	Chitobiase C-terminal domain	Interproscan
IPR008965	Homologous_superfamily	CBM2/CBM3, carbohydrate-binding domain superfamily	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR012291	Homologous_superfamily	CBM2, carbohydrate-binding domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR015882	Domain	Beta-hexosaminidase, bacterial type, N-terminal	Interproscan
IPR015883	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR025705	Family	Beta-hexosaminidase	Interproscan
IPR029018	Homologous_superfamily	Beta-hexosaminidase-like, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22600	BETA-HEXOSAMINIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004563	Molecular Function	beta-N-acetylhexosaminidase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030203	Biological Process	glycosaminoglycan metabolic process	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0030247	Molecular Function	polysaccharide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-