Gene detail

Detailed information of Sda_chr08g01020.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr08g01020.1	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	Sda_Chr8	73135429	73251559	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr08g01020.1

ATGATGTACAACAGGAAACTTTCTGTGACAAGTGCGGAGATCAACGCTACAAGCCTCAACCTCTCAACGAATAACATCAGATCTTTAGTTGATATCTCTGGAGAGGGCAATAACATTATACTGCAGTTTTCTTGTCTGCAAAAACTCTACCTCGCCAACAATGCTATAACTGATCTGCCTTCCAGCTTTTGTAAAGTCGTTCCGACGCTAGGGCAGAGAGCGACATGCTATCCTTACACCCCAAGGCGTCTGAGGCTTTCGATGACGACCCGTCTGCGCACAATACGTCAGACTGTGGGTCTTTTCGGTCGTCACAGTCTGGCATCGAATTTATCGAGCTTGAAGCACCTAGATTTGAAAGGGAATAAGTTTAGAGAATTCCCATGTTCAATCCTTTATTGTAGTCAGCTCAATACACTTGATATGTCACACAATCAGATTGTTAATATGTGTGATTTCTCAACCCATATCCACAGTAAAATGACACAGATTGACTTATCTCATAACAGTTTATCAACATTTCCTGATCAATTCAGCGCTCACTTCCCCAATCTGGAGATTTTGACACTACTTGGAAATGAAATAGAAGAGCTTCCAGACATGTCACTTGACTTGAGACGGCTCAAAACATTGGATTTATCCCACAACAAAATAAAATCTATTCCTGATGAATTCCTGGCCAAACTTCTTGTTTTAGAGACATTGGAAATGAACTGCAATGGATTAGAGAGACTTCCCAGTGAGAAGAACTCTGAAAATCTGACGTGGCTCACTAAAGTCACATTACGAGAGAATCAACTGAAAGAGAAGGCACCATTCTTTCTTCCAAAATTTCTACTAGAGCTTCCAAAACTGAGACGTTGTGATTTATCTGAAAATGGTTTAGAGGGAATCCCACCTCCAAAGCTGTGGAAGTCGTCTGTTATCAAAACACTTAAGTTCTCTCACAACCTAATTGATCAGTTGAATCTTGAAGGTTACAGAAATTGGTCAAGACTAGAACATCTTGATATCTCTCACAACAAGATATCTGAGGTAATCATTGATACAGGCATCAGGACATTTAGCCTTAAATATAATGTATCTCTACTTCCGGAGGAGATCGGAGAGTTGGCGTTATTATATACACTGGATATCAGCCATAACAAAGAGCTGACAAACTTACCCGATCAGATGGGGAAATGTGAAAAGTTACGTGATATGCCACGACATGGTACAAACTTGGAGTTTTATGAGTCCATCGCCAAAGGAAGAGCCACAAATTTGATAGAGTACCTCAAAAATAAGCTTGATAATGCTATGCGATACTACAGAATGAAGCTGATGGTCGTTGGCTATGGTCGGCGGGGTAAAACAACACTATTAAGAGCCATAATGAAGAAACCATACACCCCTGGTTGCAGTCATGTTACTGTCGGTGTGGTTGTCGATGACTGGTGCTACGAGAGGCAACGATTCAATTCCACTGTGAAGTACACCCTCAACACATGGGATTTCGCTGGTCAAGAGGAATTCTATAGTTCTCACCAATGCTTTCTCTCTAATAGAGCTCTCTATCTGGTTGTGTATGATATGGCGAGAGGGCTGGATGAGATTGACACCCTCAAGCCGTGGTTGTCTAACATAAAAGCCAGATCGCCAGGTTGCCCGGTTATCGTTGTTGGAACACACCTTGATAAGACTAGCACAAGGTCACTAGTAGTACTTGCTGAAGACTTCCAGAGAAAACTCCAGGATTTATCTCGGAATGCTGCATTTCCTTGGATCAATGGATCGATGGCTGTAGATTGCACTAGAGAGAATTCCAACCTGAAGAAACTCCGTACTTTGATTAAAGACACCATTGATGACTATCAAGTGAAGAACCAGCCTGTGATGGGGCAGCTTATCCCAGCTAACTATATCAAGTTGGCTGAGTGTCTATCTGCGGAAGCTAAGGTGCTGCAGTCAACATACCCAGTTATTAACACGGCCAGACTTGATCGGAGGGTTAAAGCTGTTATTCCGCAGATGAAAGAAAAGGAACTCCAACAGGCTGTCCGATTCCTCCATGATTCTGGTGTTCTGCTCCATTATCGAGACTCGGCTCGACACCTGAAGGATTATTACTTCATCGATCCAGGGTGGCTATGTCAGATGATGGCTCAAGTGGTTACTCTCCCACAAATAAACCCTTACATATCAAGTCAAGGAGTACTAAAGAAATCTGATGTAGAGAACTTGTTTGTTGAGAAGACAGAAGAGGGAGGCGTCACAATGAAATTTCCATCCAAACTCATTCCACAGTATCTTAGCCTTTTAGAAAAGTTTGAAATTGCCTTACCCCACTCTGAGGATACATTGCTTATACCGAGCAGATTACCAGCGGAGAGACCAGAAATCCTACTACCTTATGACAGTGAGAATATCCTGACCAGGGTTTACAGTGTGCCATATTTCCCAATTGGCTTGTGGTCACGTTTGGTTGCCAGATTAATTGCACTCAGTCACAGTCAAGTTTTTGAGCAAATATTTAAAGATGAGAAGCCAGATATGAAGTACTGGAAAACTGGGATCTACATGCTATGGAATGTGGGTGCATTTTTCTTGCTGGACTCTAAACGAGCAGAGGATGATGAGCTGCACATTAGTGTACCAAAGACAAAGTATGGAGCAAGATTTTTAGGCTTTATCGTGGATATCACTGACGACCTGATAGATGAGTGGTACCCAGGTCTGATAGCACTTGATCCCTTACAGGGGAGAGAACTTCTCAAGAAATATTCTCTGTGCGTCATCTGTTCAGATGACGAAAAACATAAATTTCCATTTGAGGAACTTTTAAAATGTACAGAACCGGCCGATAGCAACAAACGACAAATTGGTCTCAGAGACGAACAGGAGTCTGAACAACAGAAGCCACAAATTCCACTCAAAGAAGATCATGTATATTGCCCAGCCCATGAAGGCTACGTTCCCTTGACCATGCTTGCTCCTGATGTTGTGCTAACTGATTTGGAACTGAATTTGTGCCTAGATTATGAAGAATTTGACTTCATCAAAAGTCCTCAAAATCTTCTTGGTGACGGTGGATTTGGGAGCGTATATAAGGCGAAATACAAGAAGCGGTTAGTTGCTGTGAAAGTGTATGCAAATCTAGGAGATGTGCATCCCCATAAGATGTTGAGGCAAGAAGCAACAGTCCTACGATGTCTGAAGCATGTTAGTGTCATCTCACTAATCGCTGTCGGGTTCAAGCCAAGAGTTCTGGTTCTTGAGTTCGCACCAGAGGGATCACTATCGTCGGTTATCAAGAGAAATTCGTCACTCAGTCGCCTGTTGCAGCACAAAATAGCTTTACAGGTGGCGGAAGGTCTGTGTTATCTGCATAGCGTAAGGGTTGTCTATAGAGACATGAAGCCAGATAACATCCTCATCTTCAGCCTATCTGTGTCTCCTGCCATCGCAGTTAATGCCAAGATATCAGACTATGGTATATCGAAATTCAACACGTTTTCTGGTCTGTTGGTCCAGGACGGGACATATGCATATAGAGCACCAGAAGTTATCAGAGGAGAGATGTACTCAAGTCAGGCAGATGTCTACTCATATGGGCTGACATTATATGTGCTATCATCAGGTGGACTCCATCCGTTCTATGAACTGGAATCTCGAGGTGAAATGGACCAGGCTATAGCTGAGGGCATGCAGATTCCTAGCCTGCCTTCAGACCAGGCTTCTGGTTGGCCGGATATGGAGGATGTTGTGTTTAGGTGTCTGGATAATGACCCTAATAGCAGACCATCATCACATGAGGTCTGTATGGCATTGAAATCTGTTGAGTTGTCGAGTCTGAGAGCGATTCTACCGATCTCTTTGTCTAGTACAGTAGAGTGCCTTGCATATAGAGTAAGTGTATCAGAGTACAGCGTGTGGATTGGTAGCGGCGATCATGACTCAGCTCAGTTATCCTGGTTATCACTCGATGATGCAAAGTTGGAGATTAAGGGCTGTGTTTTCCAGGAGGGTCGAATTCTCTGCTTACTACCCTTTCTTGATAAATACATGTTGGTGGGAACACAAAATCGTCAGATCTATGTTTATGATGCTAACACTTGTGAAGAGATTCGGTGTTCAAGAAACCTGCCAGATGCTGTGCTAAACATATTGCATATTCCTAGGTCAAATGATGAAGATGTGATTCTGGCCGGACTGGCGTGTGGACAGATAGCGATATTTACAGCTTCAGGATTACTGTGTGAGAGTAATTTTCGTCCGGAGATTCTCGAGATTGGTAAGATTGCACACCCTGTGATGTGCATGGTGCTACATAACGAACAGATTGTCGCCGCATGTGGATACAATATAACCTTCATCAATTCATCAGGGTTCTATGTGGAAAAGATAGTCAATGTCAGCACAAAATTGAAAGATAAAATGACGGTGACAAACTTTGCTATCTCCAAACTGTACTATGTCTCCAAAAAAGAATCAAGCATGTTGGAGGCGTGGGATCTCAGAAGACCTACAAACCCGAAGGTCAGATTGAGATATGATCTCGGAAACCTCGAAGAACTTAAAGAAGATGGTAATTTATTGAAAAAAGGCACAAGAATTACAGCCTTGGCGCTCCAGAACTCGAAGACATTATGGGTTGGCACTGGTAGTGGTCATACTATTGTTTTCAGTACCACCGATCTCAGGCCCCTGATCATCACACAGAGAAATACTGGACCGGTTAGAGATATCATCTATACTGGTTTAAACAGACACAACATTGTGATAACCGGTGGATTGGGATATAAAAATCGGCAGTCATCAAATGAAAAAGATGACAGATCTAGATATGGATGTATCACAATATGGGATGGAGAATTTTCTTCAAACGTACATAATTTCAGAGAGAGTTTATTAGTCAGAGAACAGTTGTCACGAAAACTGTTAGTTCATGATCAGGAAACAGAAGACATGAGCGGTTAA

Transcript

Sda_chr08g01020.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00560	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF19056	WD40_2	WD40 repeated domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR050647	Family	Plant LRR receptor-like serine/threonine-protein kinases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48056	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-