Gene detail

Detailed information of Sda_chr08g00879.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr08g00879.1	METHYLMALONYL-COA MUTASE	Sda_Chr8	62650866	62691768	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr08g00879.1

ATGATGCTCAGAAAAATTAGAGATAAAACGGTCGACATCAACCCAGACTCGTACATCGGGCAAGGCGATGAAAGGACATGGGGCAAACACAAATTATACCAAAGCACCACTGGGATCGACATATACCACCAGTCGTTTTTTCCACGCACCACCAGACAGTGGATCAAACTCTCAGAGGGAACCTGCACACCAGAATTTGACACAAAGATCTTCAGAGTGGAGTTGGACAAGCTGCCGGCCAGCCACCCAGCATTCACCACTGACAAGAAAAAGAATAAGGTTAACACACTCGATGTGATGGGCAATGGCAAGATTCTGGTAAAAGTGGATAACGATGGCATATGCTTGTGGAACCCGCCACTGATATCAAAGACCGATTGCGCTCTGGACGTTACGTATTTCCCTATGGACCGACAGACATGTTCGATCGAAGTGATCGCGTGGACTTATGAAGCCACTCAGCTCCTTCTAACCAGTAAACATGGAATTGACTTCACATACTTTTCTGAAAACGTCGAATGGATCCTGATTGAAAACACAACAACTACCGTGGGTGCAGAATTGCAAGGCAGATCTTACTCCCGGTTGATGTTTTCGTTCACGTTACGCAGACGACCGACGTATTACATCATAAGTGCGGTGATACCTACCATATTGATGTCATTTCTGAGTCCCATGATCTTTATTCTTCCTTCGGCTTCTGGAGAAAAGATAAGCTACATCGTCACCATGTTCCTGGCATATATAGTGCTGCTGACTCTGGTGCAAGAAGAGCTGCCGAGCGCTTCGACAACGCCCTCTATTATAAGTATTTTCTTGATCATCACCACAATACTAACCGCTCTGTGTGTCGCGCTAGCTGTGTTCATTCTCAGTGTGTTCCACCGGAGCGACGAAGAGCCAGCCAGTGGTTGCATGAATAGGGTAGCTTTGGTCATGGAGAAAATGTTGTGCATGAAGAGTACGGCGGAGAAATACACCAAAATGGAAACGGTTAAACATCCGATATATCCCGGCCAGAAGCCGAGAGCTGTAGGAACGGCAAAATTGCTTAGATGGAAGCAGGTTGGCACTATATTCGATGCTTTCTGCTTTCGAATCATCATGGCATTCACTATATGCGCAACAGAGGAGAAGATGTTTAAAAAAAAGTTTGACGGACAGACGGACAGACGGACAGACGGACGGACGGACGGACGACGGACGAGGAGTGATGACTATAGCTCCACCGGAGACTTCGTCTCAGGCATAGACAAGTCATGGAGGCACCTAAATACATGTAGATGCATTCCAATCGCCCACCAGAGAAATAGCAGTTCAACTTCAATTGACACTGATTATGTTAACGATTTGTACTTTGGTATTCTAAAGAAACAGCGGACAAAACTATCCAAAGCCATCACACTTGTTGAATCAACTCACCCACAGAAAAAGCAGCATGCCCAGGTTTTACTATCAAAGATATTGCAGTATAACAAGTCAAAAAATGTCCACTCTCTCAGTGATGTGTCTGGTAGCTTCAAAATTGGGTTGTCAGGCCCTCCTGGATCTGGCAAAAGCACTTTAATTGAAGTATTTGGTAAATTTCTCACTGGAAAAGGTTTACAAGTTGCTGTTCTTGCTGTTGATCCATCCTCTGCCATGACTGGAGGATCACTTCTTGGAGACAAGACTAGAATGCCAGAGTTATCATGCGATATGAAAGCTTACATACGACCATCCCCTGCTAAAGGTACGCTTGGTGGAGTTACACGGACTACCAATGAAACTATTGTGCTCTGTCAAGGGTATGGCTTTGACATTATACTTGTTGAAACTGTTGGAGTTGGTCAGTCAGAATTTGCTGTTGCAGATATGGTTGATCTGTTTTGTCTTCTGATACCCCCAGCTGGAGGTGACGAACTACAGGGCATAAAGAAAGGAATACTCGAAGTTTCGGATATTGTTGCTGTCACTAAATCTGATGGTGATTTAGTTCCAGCAGCTAACAGGATTCAGGCGGAGTATGTCAGTGCAACAAAATTCATGAAACCACACAGTTCATGGCGCACACAGGTGACAAAAATATCTTCTGTTACAAAGGATGGGCTACCTGAACTTTGGGATATGATGCAGGAATACCGAACAAACCTCACTCAATCTGGCGAAATCGCATCAAAGCGAGAGCATCAACAGTTGGTTTGGATGTGGAATCACATTAAGGACAATATTATGGATAGGTTTAGACAACATCCTGGTGTGATGTCAAAACTATCAGATCTCGAAGTTCAAGTATCAAGGGGCGTTGTAACTCCTGGACATGCTGCTGACATTCTTATGCAGGAATTTACACTGAACAAATCTTCATAA

Transcript

Sda_chr08g00879.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02931	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF03308	MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005129	Family	SIMIBI class G3E GTPase, ArgK/MeaB	Interproscan
IPR006029	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR006201	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR006202	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR018000	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036719	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR036734	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR038050	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23408	METHYLMALONYL-COA MUTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005230	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0034220	Biological Process	monoatomic ion transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-