Gene detail

Detailed information of Sda_chr07g00777.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr07g00777.1	ADAPTIN, ALPHA/GAMMA/EPSILON	Sda_Chr7	65405258	65489433	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr07g00777.1

ATGAGAAATGTCCGATTAGAGCATTTAGATGCACCGACACAGGGAACTTTTGTCGTCAACTTGTGGCGGGGATTACCGACTGAAAATATATGGTTGAGTTCCAACTTTGATAGGAATTCTGCAATGCCGACACCAAAGCGATTACGAGATTTGATAAGAGAAATTCGTTCTGCAAGGACTGCTGCAGATGAGAGATCAGTAGTTCAGAAGGAATGTGCACAGATAAGAGACTCATTTCGGGATATTGATAACACTTACAGGTGTCGAAATGTCGCCAAGCTTCTTTACATCCACATGTTGGGCTATCCAGCTCACTTTGGTCAGCTGGAATGTTTGAAGTTGATAGCTTTACCAAAGTTTACTGACAAACGGATTGGCTACCTTGGTGCAATGTTACTACTGGATGAGCGCCAAGATGTCCACCTCTTAGTAACCAACTCTCTCAAAAATGACTTGGGCCATGAGACACAGTATATTCAGAGCTTGGCCCTGTGTACACTGGGAGGCATCTGCTCATCTGAAATGAGTCGTGATTTAGCAGGAGAAGTAGAGAAATTGATAAAGTCCTCGAATGCATACATAAAAAAGAAGGCAATCTTGTGTGCATTCTGTATCATTCGCAAGGTTCCAGATTTAATGGAGATGTTTATCCCTTCCACTAGATCAATGTTAAATGAGAAAAATCATGGTGTTTTATTGACTGCTGTGTGCCTAATAACAGAGATGTGTGAGAAAAGTCCAGATACTCTCTTGCACTTTAGAAAGATGGTTCCACAATTGGTACGAATCTTGAAGAATCTGATCATGGCTGGCTATTCACCTGAGCATGATGTATCTGGTGTCAGTGATCCATTCCTACAAGTCAAAATACTTCGGCTTTTGAGAATTCTTGGCAAAAATGATCCAGATGCAAGTGAAACAATGAATGATATTCTGGCGCAGGTCGCCACAAATACAGACACAAGTAAGAATGTTGGTCATGCAATTCTGTATGAAATCGTCCTTACGATAATGGGAATCCAGTCAGAGGCTGGGCTTAGGGTTTTAGCTGTAAATATATTGGGTAGATTCTTGTTGAACAATGATAAAAATATAAGATATGTAGCTCTGAATACACTGCTAAAGGTTGTGCAAGCTGATTATAATGCTGTACAAAGACACCGGACAACCATAGTCGATTGCCTTAAGGATCCTGATATTTCCATACGCAAGAGAGCGATGGTATTGTCGTTTGCATTGATAAACACTAATAATGTACGAGGTATGATGAAGGAGTTGCTGGCTTTCCTAGATACTTGTGATCCTGAATTCCGAAGTGACTGCTGCTCTAATATTGTAACAGCCGCAGAAAAATTTGCTCCCAATAAGAGGTGGCATGTTGATACGGTCATGAAAGTTCTTACAAGTGCTGGGAACTATGTACGAGGCGACGTTGTTTCAGTGCTGATTCAGCTGATTAGTGAAATGTCGACCCTCCACGCTTACATTGCTCAGCAGATGTACATGGCCATATCAGTTGATGACACTCAGCAACCGCTAGTCCAGGTGGCATCATGGTGTATCGGTGAATATGGTGATAAGCTTGTATCTGGTCATCTGGAGTCCGAAGAATGCATAGAGGTTTCTGAAGCAGATGTGATAGGCTCTATGGAGAGAGTGTTAGCTAATAACACGTCGCCAATAGTTACACGGGAGTACGCCATAACCGCCTTGATGAAGCTCAGTGTGAGGTTTCCCAGTCATGTTGATCGAATCAAACAGACACTGCTTATCTATGGCAGAAATACAGATGCGGAACTTCAGCAAAGATCTGTTGAGTATACCTCGATATTCAGGTCATGTGATCAGATCAGGTCTGCCTTGCTGGAGAACATGCCTCTTATAGTCAGTGGACGGAGTAAATGTGCAACATTGGCAAATGGTGAAGATAATAACGACCTTGTTAGCACGACGGAAGTCCAAAAAACAAATGCTCAAAATGTACAGATTTCTCAGCAAAAAGAAAGTCAAAGCATATTAGATTTAATTGGTGATATTGGTTCTACGCAAACTGTTCCAAGTGACACGGAGAGCAAGCCTGGAGGTGGAGTGAATGATTTGCTTGATTTATTAGGAGGCATCAGTAACAACACTGTCACAAGTCCACAGTCACCTAATATTCTGGATGGATTGGGGCAACCTGCCTTACCTTTAGTCAACCAAATGGTCAATGGGACATCTAACTCTTTGACTGTGACAGCATATGATAAAAATGGATTGTTGATAGATTTTCATTGTGAACGTGAGAATGATCAGGCAGCTGTTACCCTGATCAACTTGAAAGCAACAAATTCTACATCCACTCCGATGTCTGAAGTTACTATACAGGCTGCTGTGCCTAAGACATTCCAACTGCAACTACTGTCCCCGTCAGGAACATCTCTGCTCCCGAACAGTAGCAACACAATCACACAAGTGATCAAAGTTAACAACCCGCAAAAAGATTCGAGCATGAAAACAGTTTTTGAACTCGCCGGCAAGCCGGCTCGTTCACAAACTGTTTTCATGCTCGAATCCCAGAATGTACAACTCAACAGGACACTGACTGGGAAGGAGATTGAGATTGACATAGAACCAACAGATAAGGTTGAAAGAATAAAAGAAAGAGTTGAGGAAAAAGAAGGGATTCCACCCCCTCAACAGAGACTGATTTTCAGTGGCAAACAAATGAATGACGAAAAGACGGCATCAGATTACAAAGTGACGGGAGGTTCAGTGCTTCATTTAGTGTTAGCTCTACGAGGCGGGGCTTAG

Transcript

Sda_chr07g00777.1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UBL\|NEDD8
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF02883	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR008152	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR008153	Domain	Gamma-adaptin ear (GAE) domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013041	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR017107	Family	Adaptor protein complex AP-1, gamma subunit	Interproscan
IPR019954	Conserved_site	Ubiquitin conserved site	Interproscan
IPR019956	Domain	Ubiquitin domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR038738	Domain	Nedd8-like ubiquitin	Interproscan
IPR050840	Family	Adaptor Complexes Large Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22780	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006896	Biological Process	Golgi to vacuole transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan
GO:0030121	Cellular Component	AP-1 adaptor complex	Interproscan
GO:0035615	Molecular Function	clathrin adaptor activity	Interproscan
GO:0140312	Molecular Function	cargo adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-