Gene detail

Detailed information of Sda_chr06g03202.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr06g03202.1	MRNA-CAPPING ENZYME	Sda_Chr6	220613990	220673093	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr06g03202.1

ATGGGAATAAGCTGCCACATAGATATAACCACAGAGGGTATAGAAGCATGCTGGGTAGACATACTTTTCCCCAAGAGTAAACCCTTATTGATTGGGGTAGCGTATCGCCCACCAAGACAGTATGATTTCTTTGATAAACTTGAGAAGCTTGGCCTCGAAAATGACTTCATAGATTCTGAGGTTCCTGGTATCTTCAACAACTTGACTCTTGTTAACTACTATAGAAGCAAAGTAGATCCCATCAACAAACTTAAACTCCATGTTGTTGATGAAGATGAAGTTCATAAGATACTAGAAAGTCTGTGCTCATCCAAAGCCACGGGCCCCGATGGGATACCGGCAAGGTCAGGGTTTTCAACAGACACATGTCTGTTATACCTCACAGATAAAATTCGTAGTGAGATGGACAAGGGTAACCTTACAGGCCTGTTGATATCAGTTTTTTTGTTCCAGTTCTCAACAGCAGGAGAAATGAGTGGCAAAAAAGTCCTTGATATACCACCCAGATGGCTACATTGTCCAAGAAAGGGTTCATTAATTGTTGGTAAATTCTTGCCATTCAAGACACCACTGGACAGTAAATATGACAGCCAAATCCCAGAAGAATGCAGATTTGACATCGACATGCTGTTCAAATCCATGAAGATCATGAAATGTAAAATGGGTCTTCTAATTGATCTGACAAACACAACCAGATTCTATGATAAGGACCAAGTAGAAGATATGCAAGAGTGCAGATACGTCAAACTACAGTGTCGTGGTCATGGACAGACACCAGATGAGGAGCAGACAGAATTATTTACAAATATCTGTGAGCGGTTCATTCAGCAGCATCCACTCGAAGTTATCGGTATTCACTGCACCCACGGCTTTAACAGAACAGGTTTCCTCGTAGCTAATTACCTGGTGGAAAAGATGAACTGGAGACCTCCAGGAATATATAAACAAGATTATCTAGAGGAACTATTCAAGAAACTTGGTGATCCAGATGAAACACCGGAAGCTCCACAGTTACCTACATGGTGTTCAGAGTCAGACGATACTGTTGATGATGATGGTCACAAGATTGACCATGATGGTCGGGGTGATGATGGCACACGACCTGATGGTGGTCGGAAGAGACAGAAAACACATCATAAGAAAGAGTTCCTGGATGGAAAGGTTGCAAGTGTAACACAGTTCTCACAACAGCCAAGAGTCGCCGAGTTACAAAGGAAATGCAGGACTTTCTGCAACTGGAGAAATGATGGTTTTCCTGGATCTCAGCCAGTTTCCATGGATATTAAGAATCTCGGTTTCCTAAAGCGAACTCCATACAAAGTCAGTTGGAAAGCTGATGGCGAAAGGTACCTGATGTTAATTGAAGGCAGAAATCAAGTGTTCATGTTTGACAGAGATTTCACCGTCTTCCATGTGCCCGATCTACAGTTCTTTAGGAGGAAAGAACCTGACGTTAGCCTTACCAATACTTTAGTTGATGGGGAAATGATTTTTGATACTGTAGATGGCGTCGACAAACCCAGATATCTTATCTATGATATTATCAAGTTTGATAACATGGATGTTGGTGGAACAGATTTTGATCGACGACTGTTGTGCATAACAAAAGAAGTAATAGGTCCTAGGAATGCTAAGGTTGAACAAGGATCGCTAGATAAAACAACAGAACCATTCAGCGTCAGACTCAAACCTTTCTGGGATGTTGAGATTTCAAGAAAGCTTCTGGATGGACATTTCTCAAAAGAAGTCAGTCATGAAGTTGATGGATTGATATTTAACCCATGTAAAGATAAATACAAGCCCGGTACATGTCATGAGGTACTGAAGTGGAAACCACCAGACATGAACTCTGTTGACTTCAAGATACAAATACAAAAAATAGAGGGTGAAGGAATGCTTACGCAGTCAGCTGGTCTTCTATTTGTTGGAGGCTTTGATAAGCCCTTTTCATCAATGAAAGTCACCAAAGACCTCAAAGAGTTAAATGGAAAAATAATTGAGTGTAATTTCGATAGCGAGACACAGTCATGGAAATTCATGAGACAGAGGAAAGACAAGTCTTTTCCAAATAGCTACAGAACAGCCATGAGTGTGTGTGAGAGTATCAAACATCCAGTAACAAAAGAGATTCTATTCCAAGTGATAGAGACTGAACGATGGATGCCAAACAAGAAGCCAGCAACACCAGGCCATCCGTCACAAGATAACAAACTCATGCCTCCTCCAAAGTTACCAAATACGTGA

Transcript

Sda_chr06g03202.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01331	mRNA_cap_enzyme	mRNA capping enzyme, catalytic domain	Domain	Interproscan
PF03919	mRNA_cap_C	mRNA capping enzyme, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR001339	Domain	mRNA capping enzyme, adenylation domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR013846	Domain	mRNA capping enzyme, C-terminal	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR051029	Family	mRNA Capping Enzyme and RNA Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10367	MRNA-CAPPING ENZYME	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004484	Molecular Function	mRNA guanylyltransferase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006370	Biological Process	7-methylguanosine mRNA capping	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-