Gene detail

Detailed information of Sda_chr05g01413.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr05g01413.1	AGAP004733-PA	Sda_Chr5	105316250	105353961	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Sda_chr05g01413.1

ATGCCATCTCAAGTCTTCATGAACTACATCCATCCAAGTTCTATGCTGAACCAACTTTCTAGTCTCTGGAAAAGTGATCAGCTTTGTGATGCTGTTATTACAGTAGACAACTGTATCGTAGCTAAGGCACATAAGCTCGTATTATATGCCGTCAGTCCAAAACTGAAAAATGACTCAGAAAAATCTCAGCTCAATGTGTCTATTCTTGATGTTTCGTTGCCATCAGGCCTCGGTCATAAATCAGTGCATGCATTCTTACAGTACCTATATGAGGGATTCCTCATTCTTACTGATGACATTGCCAGTGACTTGCTGACGATTGCAAAATTCTTGGAAATCAAGTGCTTGTACAAATGTTCTCACGAGTTCTGTTCAAAACATTTTACGGATGTGCCAAATATTCCAAAAGAAGCTCCTTGGCTGGAGGAAATCAACGATGACTACAACCATTTCCGGAAAGGCGAGTGCGAGGAGAAACAGCCAATAAGGACTCGAGACAATGAACAAAATCAGAATCGTAAAAAGAGGAAAACTACGGACATTGTTGGAGATGGTGATCAACAGAAGAAAAAGACTAATGAGCAAGAGGCTGTTCCGTGTGTTATATCAGATGATTCCTCGGATGGGATTGGAGATTTTATCAGTAAGAATTCCGCAGATCAGCAGAGTAGGACAAGTGAGGTGAGAGCACCTGTTAGAAATTTGCAGGAAAAAGCAACTCCGCCTCCACATCGATCTCAGATTTCACAAAAGGTTGATTCTATGGGATCTGAGTCAAGGACTACTAATTTTGATATGGCTGCTGGTAGGAGCATGGATTCTGAAATAGCATTCGATATCAGCTCAGTCAAACAAGAACATGATCCTACAGATGTGCCGTCCCATAGCAGAATGCCTCCTGGTGATAATAGTTTTGTTGTGAAGCATGAACCCGGTGCTGACGAAGCTTTCCCATCATCCTCTAGTCTTTCATTCGCTGAGCAGGCCTCGTTTTCTGGTGACTTTCGAAACTCAGCCGACTCGGATGCTAGTTCATCACAGTTCTCAAACAGTAATTTCCAGAAGTCTTTTGGTGATTATCCACCTGGTGATTATTCAGTCAATGAACATGGTGAATATCAGGAGAGTGATATGACAGGTGGTGAAGGATTGGAATTCATGTCTAATCCTGAACAATTCGCAGGAGCGATGCAGAAAGGCGGGGTTTCCTCTGAGTCTTTCTTGGATCCAAGACTAGCAGTGTTAAGCCCTGACGACAGGTCACGTCGAAAAGAAACTCACAAGTATCGCGACTTCAGAACCAAATACGAAGCTTTAATGCTCGTGGAGGAAGGACGCATGTCAAAGAGTGAAATCGCGAGACATTTCCAGATGGCGTCAAGCACTCTCTCAACTTGGATCAAATCTAAGGACAGTATAAAGCAATGTTTCATGAAGTTTGGTGGCGAAACTCGACGTATGAGAAGTTCAAAAGGACAATTCCATGATATCGAGACCGCAACATTTGCGTGGTACACCAATGCTGTTAATGGAGGAGTTAAAGTTTCAAGGCGTTTCTTGATCGAGCAAGCAAAACAAATTGCTGTTGAACTGGGAAAAACTGAATTCAAGGCCTCCAATATGTGGCTTGATCGTTTCTGTGAACGGAACGGAATTGCTTTAAAAAATCCATTCATGAATTAAGTAATAATGTGATCTCCAATGTGACTCGACTTGTTCTCTGAGTGGAATAGTTTTTCGTTCATAAGAATCCACTCTAGGTTTATTTATAGTGCTGTCTCAATTTTGTGGCTCTGTGGACAAAATGGTATTGCCTTAAGAAATTACTCTGAAGTTAAGTAGTGCTGTCTGATATGTGCGAGTCCATCATTTCTGTGATTTTCTAAAAATAAAATCCATACTTTGAAGTTGAGTTGTGCAGCCTTGATTTCTGTGGATCAGCCTGTTGAGTGAAAGGAACAGCATTCCATCAGAAAAATTCGAACTAACTGGTACTGTCTCAATATTGTGACTTCATGTAGTCTTTGAATGAAACAGCATTTATTTATTAAACAGTGCGCTCTTAAGTAAAGTGTTCTACAGTTTGTGACTTGATGGATTCTGTGGATG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	ZBTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00651	BTB	BTB/POZ domain	Domain	Interproscan
PF03221	HTH_Tnp_Tc5	Tc5 transposase DNA-binding domain	Domain	Interproscan
PF04218	CENP-B_N	CENP-B N-terminal DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR006600	Domain	HTH CenpB-type DNA-binding domain	Interproscan
IPR007889	Domain	DNA binding HTH domain, Psq-type	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR050457	Family	Zinc finger and BTB domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46105	AGAP004733-PA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-