Gene detail

Detailed information of Sda_chr03g00560.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr03g00560.1	LUPUS LA PROTEIN-RELATED	Sda_Chr3	41014624	41047816	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr03g00560.1

ATGTTTAAAGAAGCAAAATCAAATCGACCTTTAAGGTTGATTCCTTATGAAGTTACGACAATCACACAAACGTGCATTTCGGAGGGGGAGAATGGTCCAGAAGCTAATATCCAAGAAGATCAGCTACGTGGGATGCTCAAAGCTCAGCTAGAGTATTATTTCTCAAGGGAGAACTTAGCCGGTGATTCGTACTTGCAGTCTCAAATGGATTCTGACCAGTATGTTCTTATTGCAACAGTTGCTAAATTCCCACAGGTGCAAAAGTTAACACCAAATTTAGAACTTGTTGTGGAAGTTCTCAGAGAAATACAGACAGTCCAGGTAGATGAAAAGGGAGAGAAAGTGCGCCCAAATCACAATCGATGTATTGTCATTTTGCGCGAAATTCCTTCCAGCACGCCGCTAGAGGAAGTCCAGCAGCTTTTCAGTGGAGAGACTTGTCCCAGGTTTTCTAGTTGTGAATTTGCAGCCAACGATAGCTGGTATGTCACATTTGAGTCAGACGAAGAAGCCCAGAAAGCCTACCAGTTTCTCAGAGAAGAGGTCAGAACCTTCAGAGATCGTCCTATAATGGCAAGAATAAAGGCAAAGCCTCTCGTGAGAACAACATTTGTGCCCAGAAATGGCTTCAACAAAATGCAACAGTTCTCGCAGTCTCAGACGACTCACGCGCCAACACAGGGCCATCCCCCTCCACAGCCTCTAACAACACAAGCACAGCTGTCGCCACAACCACCACCACCCCCTCAGCCACAACAGGTGATCCCACCTCCACAACCAGTACAACAACCACCTCCACCAGTAGTAACCCAACAACAAGCGCCAACACCAACACAGGCTCCGCAGCCCATACCAGACTTTACTGCTGCGTTATCACAGCGCTACCTAATGCAGGGTTTTCCATATATGAATGGGCAACAGACAATCCCGTTCTATCCACCTGCTCCGGCAATGCTACCATCGTGGCCAACTAGTCCAATGCTGGATCCCAGTATGGTGCTTGCTTTGAATGGTTACCAAGCAACAAGTGTCAAAGTAAACAACATGCCTCGTAACCATGGTGGTTTCCCAACAATTCGGACAAGGAATCAAAAACCACATAGACAGAATATGGACAGAAATGGCAATGACATGCGTACTGAGAGGCATTTAAGTGGAGGTCACCGCACCAGTCCGAGGATGGACACCTCACAACCATCATATCACAGCCGAAGGACGGACCCTGCTACCAGCCATACACATTTTATCCAGTCCGCAATTCAATCACATAATGCATCTGATAATTTAGTTATAAATAATAAACCACTAGATTCACAAATCCAAAGAAAAAGTTTCAAGAACCGGCGACGGCGGGAGGATGAGCATATTGGCAGACTGCCAGTAAGTAGCTCACCGCCAAGAGACCCCAAATCACACATTGAACCACAGTTTGAATTGGAGTCGGCTTCATCATTTCCTCCGCTGCCTGGTTCTGTGGGTAATGCAACACAGGAGGTATTTGAGAATAATTTAGCTGATGTAGTTAAAGGCACTGCCAAACCACAAGTGCGAGAAACTCCCAAGGTGCCACCAGCGTCATCGTCACCAATACCAAGTGCAAATGCTAGCAAGGAGAATGCAAATCCAGCCAGTAATACGACAAATAACAATAACACTACACAATCAGTTTCACCTGTCTCCAGCTCCTCCTCTAGCACAAAACCACTCAGTACAAATGATTCAGTCAACACTTCTCCAATAGAACAACAGTCCCAACCTAAACAGACGTCAAGCATTCAGCAGATTCCAAATCATATTCCGTCTCCAAAACAACAAAAACAAAATCAACAACAAAATCAACAACAACAACAGCAACAACAACAAATACAACAACTACAACAACAGTTGCAAGATGATGCAATGACTCCTGCTAAACTGAGTTACGCTCAAATGGTTCAAAAACGCAGAGACCCAGACAGTTCATCTGACAGACCTGGGAGTGACGATGGCATGTCAACAACTTCAGAGACTTCTTCTAAACCCAACACTGCCAGAAATAATAGTCAGACATTACGAGAGCAATCGCAAACTTCTAAGTCATCTTCTAATGGGAACTCTCGTGACGTCATTAAAGAGGGTGACCCGAAGGAGCAGAGACTCAATGGTGCTCGACGTGCTAAAGAAAACCGTGTTCGACGTGAACGGCAACGTGAACGAGAATTTGCTCCAAGGACTCCCTCGAAATGA

Transcript

Sda_chr03g00560.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05383	La	La domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006630	Domain	La-type HTH domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR045180	Family	La domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0010494	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0045727	Biological Process	positive regulation of translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-