Gene detail

Detailed information of Sda_chr01g02360.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr01g02360.1	BASIGIN RELATED	Sda_Chr1	175758517	175852386	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr01g02360.1

ATGAAATGCAATATCGTGTTATCGCTGTCCAGAAGAGGGCCACACACGATCAGCGTGCCCAACGTCGGCAGGGCTACACAGCAATATCGTGTTATCGCTGTCCAGAAGAGGGCCACACACGATCAGCGTGCCCAACGTCGGCAGGGCTACACAGCAATATCGTGTTATCGCTGTCCAGAAGAGGGCCACACACGATCAGCATGCCCAACGTCGGCAGGGCTACACAGCAATATCGTGTTATCGCTGTCCAGAAGAGGGCCACACACGATCAGCGTGCCCAACGTCGGCAGGGCTACACAGCAATATCGTGTTATCGCTGTCCAGAAGAGGGCCACACACGATCAGCGTGCCCAACCGAGAACCAATGAATCCTACGACAAGCCACGTGGACCTATTTTTGTATCAGAACCCAACAACACAGTGACGTTTGCCAACAATAAAGGAATCGTGATTCCGTGTACGGCGTACGGTCGGCCGGCGCCCCTCCTCGACTGGATTTATGATTCGGGCGCCCCTGTCGACGACATCCCTGGATTATTACAGATTCTACCCAATAATTCTTTGTACTTCCATCCGTTTGGTGCAACTCAATATCGGGAGGAAATACATTCCGTTACCTACAGGTGTATCGCCAGCAACACCGGTGGAAAGATTTTAAGTCGGCGCATGCGAGTTAGAGCTGTGATACTGGAGCAGTACAAGAAATATAATGTACAGTTGAGTAATTTGTGGGTGATGCGTGGAGGCACTGCTGTCTTTCGCTGTGATGTCAATCCTTTCTTCGTTAAAGATTATATCAATGTTACAAGGTGGACCCAGGGAACATCAGAGATACGCCCAGGTACTCGAGTCAGTATTATTCCGAGTGGTGAATTACACATACGAGATGTCCGAGAATCAGATAGTTCCGTCACGTATCGATGCATGGCCAGAAATGTGCTGACGGGTGATGAACGACTCAGCTCACAGGCACATCTCTATCTGTATAAAGCTCCATCGGCTGGTGATATCCCTAGAATCGAGCGCCGATCGACGGAAGTAACAGTGCCTGAACACGTTATTATAGAGATGACGTGTGTAAGCAGCGGCTACCCCGTTCCGAAGTACACCTGGTACAAGGAGACCAACCAAGTGATAATCGACAACATTAAGTACTTCCAGAGGGGAGGCAACCTCGTTATCTGGGGAACGAGAATATCTGATAGTGCTAAATATACATGCAGAGCGTCCAATGAAAAGGGCTCTGCTACTGCTGAAACTACACTCATCATCCAATCACCATTAACAACGTCAATCCATCCGGCTACTCAAGTCATCGATGCTGGTCATCCCGCTTCATTTAACTGTACCATCGTCGGTCATCCCATCAGTAACATCACATGGATTCTAAACGGACGCGTAATACCGGGAGATAATCGTGTCAGGATTCTATCAGGTTCCGTACTCCACATTAAAGAAGTTCTCCGTCAGGACCAAGGAATGTACCAGTGTGTCGTAACCAACAACTACGAGAACTCACAGTCATCTGCTCAATTGTCTCTTGGAGCTGCCCATCCATCATTTATGGAAACATATCGGGAATCCTACGTTCAGGTGGGACAGACGGTTTCTCTGAAATGTCTCGCTTCTGGTAACCCAACACCAACAGTAACCTGGATGCTCGATGACGAACCACTGAGACTGAATCCGCGGGTTTCTGTCGGGGAGCGTCTAACACCAGAGGGCGATGTGCTCAGTCACGTGAACATCACGAATGTGCAGATAGAAGACGGCGGAGAGTACAAATGCATTGCTATAAATGATGTCGGCAAAGTTAGATATATTGGCCGTCTCAATGTCTATGGAATACCACGAATCCGACCAATGAAAAACATCACAGCTACTGCAGACAGACCATTAGAAATACGGTGCTATGTGTCAGGATTCCCTATACACTCCATTTCCTGGTCACGAGGAGACTTGGTGCTACCAACAACCCATTGGCAGAGAGTACAGAATGGAACACTTTACATCGAGAAAGTCCAGAAGATAAGTGATGTTGGAGAGTATACATGTTCGGCTAAGAATATCGATGGGCAAGGGGAATCGAAAAAACCACCAATCATTGATCTTTTCGGATTTGGCCAAAGAAAACAAGGTGACAGAATTGTAGTTCCATGTGTCGTCAGTAGTGGTGACTTGCCAATAACTATCGGCTGGTCTAAGGACGGTCATCCGATTCCACCTGATCTAGGGGTGATCACACAGAAAACCGGACCGTATGCGAGCCAGCTTGCCATTGATGATGCCAGTCCCTTACATAATGGTAACTACACCTGCCACGCCAGTAACCAAGCTGCCTCCTCTCAGTTAACAGCTCAATTACATGTTAATGTTCCACCACGGTGGGTAGTGAAGCCACACGATGAGTTTGTGATCCTCAAGCAGACAGTGCAAATCGACTGCTTCACTGCTGGAACACCGGAGCCGACTGTCACATGGAAGAAAGCTCAAGGTGAAGAGCCAGACAATTATATTCCGATAAACAGTGATAGCACTGGTAAAGATCGTCTCAAAGTGCTAACTAACGGAACACTGGTTGTGACTGAAGCCAAGGAGAATGATCATGGGTACTTTCTGTGTCATGCGAGTAACAGTGTCGGTCTTGGTCTCAGTAAAGTAATCATGCTGAGAGTACATATTCCTGCCAGATTTGACCGGCCTCGAAAGAGCTACACGAAGCTGAAGAACAAAAATGCAACAATGCAATGTGAGGCGAAAGGTGATAAACCGCTGTCTGTGACGTGGACTTTTAATGGGAAGTCGCTGATGCCACATAACTCAAGAATTCGTGTTGAAACAGCTAACACAAATAAAGGGAAGGTCTCCTATCTATTCATCGCACCAGTTAGGCGAGAGGACACAGGACTATTCGTCTGTAATGCCAAAAACCATTTTGGAAGCGGATCAATGAGGCTCAATCTCACTGTATATGAACCACCTGAGGCTCCTCGTAACTTGACAGTTGTCCATGTGACCAGCCGCACGGTATCCGTGTCCTGGGTAACTCCTTATGATGGGAATAGTCCACTACTCTACTACATCGTCCAGTACAAGAACTTCTCAGATGTGTGGCAAGGCTTGATTCCAAATACGACATCACCTGCGAGTCTCATGTCGACGACCATTACTGATCTTCATCCTGCCTATGATTACCATATACGAGTGTTAGCAAACAATTCCATCGGCTATGGTACTCCGAGCAAAGAGATCACTGCACGAACACAGGAAGAAGCTCCATCTGGTCCACCACAGAACGTACTTGCTGAAGCGATTGGTTCACAGGCCTTGAAAATCACATGGAAGGCACCCCAACAGCACCAGAAGAACGGGAGAATATTAGGTTACTACATCGGCTATAAAGAAACAAAGTCGCCTTCCCATTTCATCTACATTACACGGACAATCGACAAGAATTTCAATGCTGAATATGTGCTGCATAATCTGAAGAAGTTCACGGAGTACACGATTCATATCAAAGGTTACAATGCACAAGGCATCGGTCCACAGTCCCAGAACACTAAAGTATTCACACTGGAAGATGTGCCAAGTCAGCCACCACAAGGTGTTCAGGCCACAACCATCAGCTCTCGAGACATCCGAGTGATATGGGCTCCACCTCCGCTGTACACACTCCATGGAATCCTACAGGGATATAAGATCATGTTTAAGCCTGTCAGGTCTGATGAAGATGAGAGTGATGCCAGTACGGTGACATCGACCAATTTGGAGGCAGTTCTAACTGGACTACAGAAGTATACTAACTACTCTATCCAAGTGCTAGCGTATACTCGCAAGGGCGAAGGTGTCAGAAGTAACGCCATTCATCTGAGAACACAGCCTGATTTGCCTGAGAGTCCTGCAGACATTAAAGCTTTGCCTGTAAACGCCACTGCGATCATGGTGTCATGGAAACCACCACAAAGGGAAAACGGACTGCTCACAAAATACAGCGTCTATGTCAGGAACCTGACTAGTGATTCAAAGGTGATGCCTGCTAAAATAGCATCGTTCCCTAAGTTCCAGCTGATACCGTGGGATCACCCTGTATCGTTTCCATGTGTAGCTGTCGGTGATCCAAAGCCAACCATTATGTGGAAAGTGAGAGGGCAGCCCATAGTTTCTGATGGTCAAATCAACGTTTTTGATAATGGCACACTGAACATAGGGGCGGTGCGAGGAACGGACGCTGCTAATTATACGTGTCATGCTGAAAACATAAACGGTGATGATGAGATGAAGGCAACTCTACATGTGCAAGGGCCCCCTAACCCACCATCGCTGTTTGTGGCAGCCACGACTGCAGCCACGATACAAGTGAACTGGCTTTCTGGGAGCAATGGTGGCAGTCCCATACAAGGTTTTGTTCTGAGTTACAAGAAAGAGCATGGGAATTGGTTGACAATCCAGCTCGGCCCTCAGAATCGGACATACACAGCATCAGATCTACTGTGTGGCACGGCCTATAAGTTCACTGTGAGAGCGTTTAACCACATCGGACCAAGCACCGACAGTCAGGAAGTGTCGGCTAAAACCAATGGATCAAATCCAATCATGCCTCCACAAAGTATGATAATGCGTTATGTGAATGCCACGTCAGTCGACCTTGACTTTCGCACATGGCTGACGGCTGGCTGTCCTATCAGATACTACTCAGTCAAGTATCATGTCTGGGGCGTGGAGTCGTGGGTCGAAGTATCCAACAACATCAAGCCTAACACGACGGTGTTTACTGTACAGGACTTGCACCCAGCGACGTGGTATGTGATGACGGTTTCTGCACACAGCGATGCTGGGTCCACAGAAAGCACCCTGAAGTTTGCTACCCTCACGTACACAGGGAGTACCATCACTCCGTTCTATGTCACAGACAAAAAGGACACGCAGTTCTATGAGAAGATATATGTTATGATTCCTCTATGTGCCAGTATTATTATACTAACCGTAGTCTCCGTCGCATTGTTTCTATACTGCCGACGGCGGAGACTTCTGCTCCGGTTCAAAGAGCACACAAATTTGAGACGAGACATAACGGCGGAGACGTCGTTGATGAATGACCTTGACAAGAGAATGAATGTCGAATTGGACAGCAGCGCTAACTATCAGGAGGATCTCAGTAAGCGGAACGTCAACCTTCTTATCTCCCTTCATTCTGACGACAATCTCGGAGGAACGAACCCCAGTTGGCTTGATAGCAGCAAGACCAACAGTGATAATGGTTCATTTGGCCGTTCAGATGATGATGGCAATATTAATCCATATGCAACATTCAAAGAGATAAGAACCGTGGCGATCCCGGAGCGAGAGAGGGAGTACAAATCATTACTCCCTCCTCCGAACAGCGCGGAAGAGGAGGAGGCAGAGGAACAGGACGAGGTTGCCAGGGAGAAGGCAGCAGCTCAACAGGAGGCTAATTTGATGAATATTCAGACCCCCTCTGAGCCGTACGTGCCATTCTTCCACCAGCGAGATGGGCAGCCAGCATCTCGATTCCAGCCACCTACACACGTTGTGCCCAAGGCAGCCGTAGGTAAGGCTGGATACGAGAATCAAGGTGTGATTCTGAGTCCACGGAAGTATGCCAGTGCTGACCAGATTCACGCGCTGTTCACCGCAGCGCCACCCAGACCACAAAGTGCTTATAGTAAGGGAAAACCAGGCTCACGAGGCAGCAACAGTAGCGAGAAAGGATCGCATCGTCACAGTGTGATATCGAGTGTCACGACGGTATCGTCCAGTCGCGATGAATTGATGGAAGCATTTGAGAATGCGAAGCGGAACCCTCCACCGCCGGTGGTGTATGAGAGTCCCCATTCCAGTTCGCAGCCGACTGATAGTTCTGTGACGACAGAGCCGGGAATCGTGCAATTTACGCAGTCGCCGCCAAAGCCTGATGAACAGAGGGAGGCGTCCTGTGAGGTTCCTGCGTATGAGCGTAAGTACAAATATAAAAGGCGGCATCGGAAGCGTCAGCCTGAGACTGAAAGTGATGCGACAGAGTATGAGCAGCAAGACATATATGAGCGCAGTCCGCCGAGGAAGTCGCGTGGACGATATAATAGGTCTGGCAAGCAACGAGGTCAAATTATTGGAAAAAGAACACTGGGAACTATGCAGATTCCCAGAGCACACAGTAGAACCAGTACGACGAGTAGTGAGGAGGTAACTTATGCTTTTGGTGGCCGCGATTCACCAACAAGTCCGTCCGATGGTTACCTATCCTATCCATGTGACAGCCAAGGAATCTATACCGACTCGGAGTTCATGGCCCAAAGGCGTTTAAAGAGAAGAGCGAGGAGAACCCCCCATGCTAGGGTTAAATACGACACATGCTTAGAGACGCCAGGAACAGATGAAAACAAACCACTGGTGATGGCAGCCGCCAAGCAATCTCTGACCACGCCCCCTGAGGAGGACGAGGCCGTCAGCCTGTTAGACAGGTACTATCGGCCAGTGGATGAAGTGAAAGCCGAAAAAGGTCGTAAAAGCAGCAGCAGCGTTCATTTACATGAGGAGGATAAAGGCTACACTGACGATTTCACCGTCAATGGATTAGCGATATCGGAGAGCTCTGCACTGAATCGTGAACTACCGACAGATGAGTACGGAGCTCTACACTGA

Transcript

Sda_chr01g02360.1

Protein

Sda_chr01g02360.1

MKCNIVLSLSRRGPHTISVPNVGRATQQYRVIAVQKRATHDQRAQRRQGYTAISCYRCPEEGHTRSACPTSAGLHSNIVLSLSRRGPHTISVPNVGRATQQYRVIAVQKRATHDQRAQPRTNESYDKPRGPIFVSEPNNTVTFANNKGIVIPCTAYGRPAPLLDWIYDSGAPVDDIPGLLQILPNNSLYFHPFGATQYREEIHSVTYRCIASNTGGKILSRRMRVRAVILEQYKKYNVQLSNLWVMRGGTAVFRCDVNPFFVKDYINVTRWTQGTSEIRPGTRVSIIPSGELHIRDVRESDSSVTYRCMARNVLTGDERLSSQAHLYLYKAPSAGDIPRIERRSTEVTVPEHVIIEMTCVSSGYPVPKYTWYKETNQVIIDNIKYFQRGGNLVIWGTRISDSAKYTCRASNEKGSATAETTLIIQSPLTTSIHPATQVIDAGHPASFNCTIVGHPISNITWILNGRVIPGDNRVRILSGSVLHIKEVLRQDQGMYQCVVTNNYENSQSSAQLSLGAAHPSFMETYRESYVQVGQTVSLKCLASGNPTPTVTWMLDDEPLRLNPRVSVGERLTPEGDVLSHVNITNVQIEDGGEYKCIAINDVGKVRYIGRLNVYGIPRIRPMKNITATADRPLEIRCYVSGFPIHSISWSRGDLVLPTTHWQRVQNGTLYIEKVQKISDVGEYTCSAKNIDGQGESKKPPIIDLFGFGQRKQGDRIVVPCVVSSGDLPITIGWSKDGHPIPPDLGVITQKTGPYASQLAIDDASPLHNGNYTCHASNQAASSQLTAQLHVNVPPRWVVKPHDEFVILKQTVQIDCFTAGTPEPTVTWKKAQGEEPDNYIPINSDSTGKDRLKVLTNGTLVVTEAKENDHGYFLCHASNSVGLGLSKVIMLRVHIPARFDRPRKSYTKLKNKNATMQCEAKGDKPLSVTWTFNGKSLMPHNSRIRVETANTNKGKVSYLFIAPVRREDTGLFVCNAKNHFGSGSMRLNLTVYEPPEAPRNLTVVHVTSRTVSVSWVTPYDGNSPLLYYIVQYKNFSDVWQGLIPNTTSPASLMSTTITDLHPAYDYHIRVLANNSIGYGTPSKEITARTQEEAPSGPPQNVLAEAIGSQALKITWKAPQQHQKNGRILGYYIGYKETKSPSHFIYITRTIDKNFNAEYVLHNLKKFTEYTIHIKGYNAQGIGPQSQNTKVFTLEDVPSQPPQGVQATTISSRDIRVIWAPPPLYTLHGILQGYKIMFKPVRSDEDESDASTVTSTNLEAVLTGLQKYTNYSIQVLAYTRKGEGVRSNAIHLRTQPDLPESPADIKALPVNATAIMVSWKPPQRENGLLTKYSVYVRNLTSDSKVMPAKIASFPKFQLIPWDHPVSFPCVAVGDPKPTIMWKVRGQPIVSDGQINVFDNGTLNIGAVRGTDAANYTCHAENINGDDEMKATLHVQGPPNPPSLFVAATTAATIQVNWLSGSNGGSPIQGFVLSYKKEHGNWLTIQLGPQNRTYTASDLLCGTAYKFTVRAFNHIGPSTDSQEVSAKTNGSNPIMPPQSMIMRYVNATSVDLDFRTWLTAGCPIRYYSVKYHVWGVESWVEVSNNIKPNTTVFTVQDLHPATWYVMTVSAHSDAGSTESTLKFATLTYTGSTITPFYVTDKKDTQFYEKIYVMIPLCASIIILTVVSVALFLYCRRRRLLLRFKEHTNLRRDITAETSLMNDLDKRMNVELDSSANYQEDLSKRNVNLLISLHSDDNLGGTNPSWLDSSKTNSDNGSFGRSDDDGNINPYATFKEIRTVAIPEREREYKSLLPPPNSAEEEEAEEQDEVAREKAAAQQEANLMNIQTPSEPYVPFFHQRDGQPASRFQPPTHVVPKAAVGKAGYENQGVILSPRKYASADQIHALFTAAPPRPQSAYSKGKPGSRGSNSSEKGSHRHSVISSVTTVSSSRDELMEAFENAKRNPPPPVVYESPHSSSQPTDSSVTTEPGIVQFTQSPPKPDEQREASCEVPAYERKYKYKRRHRKRQPETESDATEYEQQDIYERSPPRKSRGRYNRSGKQRGQIIGKRTLGTMQIPRAHSRTSTTSSEEVTYAFGGRDSPTSPSDGYLSYPCDSQGIYTDSEFMAQRRLKRRARRTPHARVKYDTCLETPGTDENKPLVMAAAKQSLTTPPEEDEAVSLLDRYYRPVDEVKAEKGRKSSSSVHLHEEDKGYTDDFTVNGLAISESSALNRELPTDEYGALH*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075	BASIGIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0070593	Biological Process	dendrite self-avoidance	Interproscan
GO:0098632	Molecular Function	cell-cell adhesion mediator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-