Gene detail

Detailed information of Sda_chr01g01071.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr01g01071.1	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Sda_Chr1	83539388	83542236	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr01g01071.1

ATGGATGACGACAACAGTGATCGGACTTATTCGGCTGATCAAATCGAACAGCTACTCCGATGTTCTGTTTGTTTAGACAGATACAGACAGCCAAAGTTGTTGCCATGCCAACATACATATTGCATGGATCCGTGCTTGGAAGGACTTGTGAATTATTTCACAAGAAAAATAAAATGCCCAGATTGTCGAGCGGAGCATCAAGTTTCACACCTGGGCGTGTCTGCTTTTCCAAATAATCTGTCAATCATGGCATTTCTTGATCTTCCTTCTTCGCAGCTGACAGCGAGAGGCAGCGAACAGAGGCAAGCAGTCAGGGAACCGGAACAACACACCCAGAACAATCGCGATGCCAGACATCCAGTAGCCACCCCACCGCAAGAGCGCGAACATGTTGACGACGCACCCCCAATGAGACATTTCCTGGGTGACGGCACTGGATGCCCTTCGTGTGGTTCAGAGAGGAACCTTTCTCTGTGTTTGCACTGCGACCAGGCTCTGTGCGATGCATGTAAACGTTACCATCTGGACCAGCTGAAGCTCGACATTTCTAGGTTAGTGAATATGATCCGCCGTGGTCTTCCGAAGCTTGCCGAAACACTATCAACGGTCGAACAAGGTTGCGAACAGGTGCGTCAACAGGGCCAAACACTTCGGACCGAAATCAACGACGCTTTCGAACGTTATATTCGTAATCTTAAATCGAGACAAAGACTTGTTCTAAACGAATGTGAAACATATATTCTAGGAGAACTAAGATCGTTGAGATTCTTCCAAGAAAATCTTGAAGTTGAAATTGCCAGCACAGCAAGTTTCTGCGATACGACCGAGGCAACTCTGGAACGGTCAAATCATAATGCCCCAGACGAGGACTTACTGTCCATTCGTAGCCGGTGCACGGAGCATATGGATAATATCAGGCTGTATGAGTCTGGTGGCGTAAGGATGCCACATCCCAGACGCATTGAATTCTATACATCACCACAGCTTCTTTCAAGTGCTATAATCAACTTTGGCGAAGTCCAACTTAATTCGTCGCCGGAAGCATCTCCTCCGTCAGAAAATGATGACGCGAGAGACGAGCCAGCACCATCAGCTATAAGTACAGAACAACGTAATCAAAGCAGCGACGATCTATCGGATGTACAACCAGACAGCAATGTCGAACCCCTTCCTGAAATAACTGCTGAGTCCTCAGATGACGATTTACCAATGAGCCGAAACAGGTCAGTGCCGACTCGTTGGAGTTCCCATGGGGTTGGAAGACGATATCCGACATCTTCTGATTCGTCGCATTCTCTTCCGGCGGCTCTTTCTTGGGATGAAATCATCAGGGCGAATACTGTGGACGACGACGCTTTAGCCGCTGAGTCTCGACGAGAGAGAATGCGTCACAGAAGGCAACAACATCTATCAGATACGCGGATTGCTAGTCTTACTCCTGCGACTAGTTCTATTACCAGACGATCTGGCGATTCTCCGTCATCTAGGCCAGAAATCTCCAGTTTGTCACCAAGAATATCAAGACCACAAGATGGCGTTGACAATACGTCGTCGTCCACCATTGACTCACTGCGGGTGTCTCCCCGGCTGGCAAGCCACGACGACGTTTTATCTTCGCCACGCCTATCGAGACCATCTCCTCGTGTTGGGCTCTTAGTGGCATCCAGATTATCTAGGTCACAGGGATCTGGCGCAATTCAAATTCCGGGTAGGCATGGAAGCCACCGTGATACAATAAGAGAAGAATCAACAAGCCCAAGCAGAAGTGACAACTCGTCCACCGACAACGGTGCGGTTGCTGTGACAGGTTCGAGGCATACCAGACCTCGTGTAAGGCAACCGGTCCGATTTGACGTAGGTCGGCGGCGGGCGGCGGAAGAAAGTTCCGAGGAGAGTGACAACGCACTCGCCACATATACCCGAGTGTCGGGTGGTGCGAGCTCCATCATTCAGTCGTCAGAGATCAATTATCAGGCGAAGGAACGATCTGTCGTACATTTCGGGGAGCGAGGGAATGGAGAAAATCAATTCACGTGGCCGCGAGGGGTCGCTGTTTCTCCGATTGACGACACTATTGTTGTCGCCGACAGTAGCAACCACCGGGTGACGACGTTCGACGCAAATGGGCGACTTTTGAAATCCTTCGGAAGTTACGGGGTCAACGAGGGCGAATTCGATTGTTTAGCCGGAGTGGCAGTGAACTCGTTTGGTCAAATCATTATTTCTGATAGATATAATCATCGAATTCAGATATTCGACCATCAAGGAAATCTGCAGACGATTTTTGGATCAGAAGGAACCGATAATGGCCTCCTCAATTACCCGTGGGGCGTTGCGGTGGACACTATGGGATTCATCTATGTGTGTGACAAAGAGAACCATAGAGTTCAAGTTTTTCAATCGAACGGAACATTCGTTCGTAAATTCGGTCGCTATGGCAACAGCGTCGCCCAATTCGAAAACCCGCATTACCTTGCTGTCAGTCCAGAAAATGAGATATACGTTAGCGACACGAGTAACCACAGAATTCAAGTGTTCACCCGATATGGTGACCTTTTGTTTACGTTCGGATCTCAGGGCAGCGGGAGAGGTCAACTGAAACACCCTAAAGGGATCGCTATTGACCGCGAAGGGTTCGTCATTGTTGCGGATAGCGGCAATAGCCGAGTTCAGGTGTTCAGAGGTGACGGTAGACACTACACCATGTTTGGTGGCTATGGAATCGATAGCGGGGGATTCAAAGGCCTAGAAGGTGTGGCACTTCTATCGAATGGCAATATTGTAGTTAGTGACAGAGAGAACCATAGAATTCAGATATTATGA

Transcript

Sda_chr01g01071.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-