Gene detail

Detailed information of Sda_Sca01563.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_Sca01563.1	GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED	ptg000737l	1576131	1582459	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_Sca01563.1

ATGGCAAAACAAGCTGATAAACAAATATCTAGTGGAGATATTAGTCCATTAACTGGAATACCATATGCACATAAGGATATTTTTTGCACCAAAGGTGTTTTAACAACTAGTGGCTCGAAAATGTTAAATAACTTTATCGCACCATATGATGCAACAGTAACTGATAAATTGCATAATCAAGGTTTAGTAATGTTGGGTAAAACTAATATGGATGAATTTGCAATGGGTTCTTCTAATGAAACTTCATTTTATGGTGTTGTTAAAAATCCTTGGGGAATTAATAAAGTCCCTGGTGGCTCTTCTGGTGGATCAGCAGCTGCAGTTGCTGGTGGTTTAGCAGTGTTTGCCACAGGCACAGATACTGGTGGAAGTATTCGACAACCTGCAAGTTTATGTAATTTAACTGGTTTAAAGCCAACTTATGGTAGGGTATCTCGTTACGGAATGATAGCTTTTGCTTCAAGCTTAGATCAAGCAGGACCAATGACTAAAACGGCAGAAGATGCTGCGATTGTGCTAAATGCTATGGCAGGTTTTGATAAAAGAGATTCTACAAGTGTGGAACAAGATGTGCCAGATTATACAAAAAACTTAAATGATTCTTTGGATGGTCTAAAAATCGGCATACCAAAAGAGTTCTTTGATAAAAACTTAGATAATAATATTGCAAAGATTATTCAAAATGCTATAAAAGAATATGAAAAAATGGGTGCGATAGTTAAAGAAATTAGCCTGCCTAACTCAGCAGTATCTGTGCCAACATATTATATTGTAGCTCCATGTGAATGCTCATCAAACCTTTCAAGATTTGATGGTGTTCGTTATGGTTATCGCTGTGAAAATCCAGTTGATTTAGACGATTTATATACTCGCTCAAGAGGTGAGGGCTTTGGCTCAGAGGTAAAACGCCGTATTATGATAGGAACTTATGCATTATCAGCTGGATATTATGATGCTTATTATTTAAAAGCTCAAAAAGCACGACATTTAATTAGTGATGATTTTGTTCAAGCATTTAAAGATGTTGATGTGATTATGGGTCCAACATCGCCAAATACAGCATTTGATATTGGCGAGAAAGCTAAAGACCCAATATCGATGTATTTATCAGATATTTATACAATTTCTGCTAATTTAGCAGGTCTGCCTGCTATGAGTATTCCTGCTGGGTTTGATAATGACTTACCAGTAGGGGTACAATTAATTGAACCCTCAAGGAATATAATTATGGAATGGGAAACAGTTATAGGCTTAGAAATACACGCACAATTAGCCACAAAAACAAAAATATTCTCTGGAGCATCAACAAAGTATGGAGCAGCAGTAAATGCTCAAGCTTGTGCCGTTGACTTAGGCTTGCCTGGTGTATTACCAGTATTAAATAAAAAAGCAGTTTTTATGGCGGTTAAGTTTGGTTTAGCGATAGATGCGAAAATCAATAATCGTAGTATATTTGCTAGGAAAAATTATTTTTATCCAGACTTACCAAAAGGTTATCAAATATCACAATTTGAGATACCAATAGTTGGTGAAGGTGTTTTGGATATTATCGTTGATGAAAAAACTTTAACTATTGGAGTAACAAGAGCTCATTTAGAAGAAGATGCTGGTAAATCAATTCATGATATTTTTGCCTCTGAAACAGCAATAGACTTAAATAGAGCAGGTACACCGTTACTAGAAATAGTATCAGAACCTGATATGCGTAGTAGTGCCGAGGCTGTTGCCTATGCCAAGAAAATTCACTCATTAGTGCAATACTTAGAAATATGTGATGGTAATATGCAAGAGGGTTCTTTTCGTTGTGATGCTAATATCTCTCTTCGCCCTAAATCTCAGCAAGAATATGGCACAAGAGCAGAAATTAAAAATATTAATTCATTTAAGTTTTTAGAAAAAGCAATAGAATATGAAGTAGTACGTCAACAAGATGTATTAGAAAGTGGTGGTAAAATTGTACAAGAAACAAGACTTTATGATTCTGTAAAAGATGAGACTCGCTCAATGCGTTCAAAAGAAGAAGCAAACGATTATCGTTACTTCCCAGATCCAGATTTATTACCGTTAGATTTAACTGCCGAAGTAATTCAAAAAGCTAAAGATTCTTTACCAGAATTACCAGCTGTGAAAAAACTTCGATTTAAAACTGATTATAAATTAAGTGAATATGATGCAACACTTCTAACTAACGAAAGAGATTTAGCTAACTTTTATGAAGAGGTTGTTAAAAACTCTAAAGCAGATGCAAAACTTTGTGCTAATTGGCTTATGGGCGATTTTATAGCAGCACTTAATAAAGAGAATTTAATTTTAAATCAAAGTCCTGTTAGTGCCAAAGACTTAGCATTATTAACAACAAGAATTGTTGATAATACCATTTCAGGAAAAATTGCTAAAGATGTATTTTTTGCTATGTGGAGTGGCGAGGGTAATGCTGATGAAGTTATCGATAAAAAAGGTTTAAAACAAATCACAGATACTGGAGCAATTGAAAAGATAATTGATGAGGTTATAGGTAATAATCAAGGTCAAGTTGAGCAATACAAAGGTGGCAACGAACGCTTATTTGGCTTTTTTGTTGGGCAGGTTATGAAAGCCTCACAAGGAAGTAGTAATAGTGGTGATAATGTTTCAACAGAACATGCTACAGTACCAACACAGGCTACAGAACTACAATCTTATTATAAGGCAACAGCAATAAGTCCATCATCTTATTATAGATCAGAGGTTGATAATGCACCTTACTTATCATCCAATTCACAAGCAGCAATAAGCCAAGTTGGAATTGAAAAATATATTACAGTCGTTTTTAACTATAATAAAGTAGGAAAATCACTGAGTGATACATCTGCTACAGATTTAGATTTAAATAAAATACCTGCATGGGATACTAACAAAACATATTCGACCGCTGGTAATGTAGTGCAGCATGCTGATGGTGCGAATATTGGAATTTATTCTAATAAATGGTGGACTAGTGGTAACAATCCTACAAGTGCAGATGTATGGAAATTAATCAAAAAAACAAATACAAGTGGTACAGAATTAGTAGGAAATGAGGCCGTAGAAACCTGGAATGCTACATCATTTTATGTTGGTGATTCTGTAATTTTTCATAATAGTGGTACTTGTTATAAAGCTAAGTATTGGACAAAAGATGAACCTCCAAAAATCATGCCAACTAACGACTGGGAAACATCATGGAAATTTTCAACGGACTGTGGCACATTTACTGCTGGCGATAAAAGAGTTTCAGAAGATTTAATCACTAAAATATCTGCTGGGGCAACTTCAAGTATTGGAGACAAAAATGTAGCAGATGAGCAAATAACTCCTATTATACCTCCAGTTATTCCTGCAAATGATGATGATAATACTCCTCCATCACCGCCACCTACTCCAATTGATGTAGTAAAAGATAGCGGACTAGCATCTGAAGCAGGTAGCGGACTACCAGCTGAAGGTTATGAATTCTTAAGAACCGTAACAACGGTTGATTGGGATTGGCTGTTTCCGCTTAGATCAGGTAAATTTAGTACACTCGGTGGACCTAGAAATATGGAACCTATGGCATCATTAGATGGTTCTAAGGATACTTTCTCATTGAGCAACTTCAAATTAGCTATTATTGAATATAACAGTTGGGCAGTTGCTAATAATTATAAACAGTTCTTGAATGAAGGGACGCAAAGACAACAGGCACAAGAATTTTTAATATTTTGGGCAAAATCTTCTCGTGAAACTTCTGGAAGTTGGAGTACAGCTAAATCACCTTGGATTGAAGATTTAGATATAAACGGAAAAATTACAAAAGTATGGAAAGGTGGACTTTATTGGGTTGAAGAAGTAGGATATAGTACTGATGAAAATACTGGTGAAAGTCCTGTTGTCAATTATGTCGATGCTGGTTCATCTTTTACTCCAGTAGCAAACCGTTCTTATTATGGAAGAGGAATTATTCAGCTTTCTTGGAACTATAACTATGGTGCATTCTCGGCATGGATGTATGATAATGGATTATTTCCCCAAGTAATTACAGCAAGAAATACTTTACTTTCTCGTCCTGATTATGTTGCCACTAAAGGTGAATTATCTATTTTATCTGGAATTTGGTTTTGGATGACACCACAGGGAGCAAAACCTTCTTCTCATGATGTAGTCTTTGGTGATGTATCAAATATTTCTACATCAGGTCAAGATCAAGGGTTACCACAAAGAAACGATGGAGGAGCACTTCCTACAGCTAGTGGTGATACCTATGACCAGTCTGTATTAGCATTTAGAATTGGTACTGTTATTAACATAGTAAATGGTGGGTTAGAATGTAATAACGCAGCTAAATGGCATCCTGGACCTATGCAACGCATTTCTTATTATAATGCATATGCTGCTTATTTCAATAGCACACATAATCTTGATGTGACCTTAGTTGATGCGGCAATTGATGTGTGGAATGATAAAATTAAAGACGATAGCCATGATGATTTAAAAATGGCATCTTGTTCTGCACAAAAATCATACTACGGTTGGTAA

Transcript

Sda_Sca01563.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00182	Glyco_hydro_19	Chitinase class I	Domain	Interproscan
PF01425	Amidase	Amidase	Family	Interproscan
PF02637	GatB_Yqey	GatB domain	Domain	Interproscan
PF02934	GatB_N	GatB/GatE catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000726	Domain	Glycoside hydrolase, family 19, catalytic	Interproscan
IPR003610	Domain	Carbohydrate binding module family 5/12	Interproscan
IPR003789	Homologous_superfamily	Aspartyl/glutamyl-tRNA amidotransferase subunit B-like	Interproscan
IPR004412	Family	Glutamyl-tRNA(Gln) amidotransferase A subunit	Interproscan
IPR004413	Family	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Interproscan
IPR006075	Domain	Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic	Interproscan
IPR014746	Homologous_superfamily	Glutamine synthetase/guanido kinase, catalytic domain	Interproscan
IPR017958	Conserved_site	Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site	Interproscan
IPR017959	Family	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E	Interproscan
IPR018027	Domain	Asn/Gln amidotransferase	Interproscan
IPR020556	Conserved_site	Amidase, conserved site	Interproscan
IPR023168	Homologous_superfamily	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2	Interproscan
IPR023346	Homologous_superfamily	Lysozyme-like domain superfamily	Interproscan
IPR023631	Domain	Amidase signature domain	Interproscan
IPR036573	Homologous_superfamily	Carbohydrate-binding module superfamily 5/12	Interproscan
IPR036928	Homologous_superfamily	Amidase signature (AS) superfamily	Interproscan
IPR042114	Homologous_superfamily	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11659	GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004568	Molecular Function	chitinase activity	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006032	Biological Process	chitin catabolic process	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0016874	Molecular Function	ligase activity	Interproscan
GO:0016884	Molecular Function	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	Interproscan
GO:0016998	Biological Process	cell wall macromolecule catabolic process	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0030956	Cellular Component	glutamyl-tRNA(Gln) amidotransferase complex	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan
GO:0050567	Molecular Function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0070681	Biological Process	glutaminyl-tRNAGln biosynthesis via transamidation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-