Gene detail

Detailed information of Sda_Sca01515.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_Sca01515.1	GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE	ptg000737l	1220560	1225001	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_Sca01515.1

ATGAAAGGAATAATACTAGCAGGTGGTAATGGCACAAGGCTTTACCCAATAACTAAAGGCATATCAAAACAATTAGTGCCGATATATGATAAACCAATGATTTACTATCCATTATCAGTTTTGATGTTGGCAGGTATTAAGGAAGTTTTAATAATTTCAACAGAGCATGATTTACCAATGTTTAAGGAATTATTAGGTGATGGTAGTGATATTGGTATGGAGTTTTCTTATATAGTACAGCCAAACCCAGATGGATTAGCACAAGCGTTTATTTTGGGTGAAGAATTTATTGGTGATGATTCTGTATGTTTAGTTTTAGGTGATAATATTTTTTATGGTGATGGTTTTACAAAGCTTCTAACAAAATCTATTAAAACTGCTGAAGAAAATAACAATGCTACTATTTTTGGTTATTATGTTAAAGATGCTAAAGCTTACGGCGTTGTAGAATTTGATGAAAGTGGCAAGGCGATAACTCTAGAAGAAAAACCCAAAAAACCTAAATCTAATTACGCAGTTATTGGTTTGTATTTTTATCCTAATGATGTAGTTAAAAAAGCTAAAAAAGTTAAACCATCAAATCGTGGAGAATTGGAAATTACCACTTTAAATAAAAATTATTTAGATGAAAATCGTTTACAAGTAGAATTAATGGGTAGAGGGTATGCTTGGCTTGATACTGGCACACATGAAAGCTTATTAGAAGCCTCACAATTTATCCACACAATTGAAAATAGACAATCTTTAAAAGTGGCTTGTATAGAAGAGATAGCATTTAATATGGGTTATATAACAAAAGAAAAACTTTTAGAATTAGCAAAACCTTTAAGTAAACCAGATTTATTGTTGCTAAAAACATACAAGGATGATATAAAAGTAGATGGTTGGCTCATGAGTGAGAAGCTTGACGGTGTAAGGGCTTATTGGGATGGAAAGAAACTTATATCACGCTCTGGAATTGAGTTTAAAGTTCCTAAATGGTTTGTAAAGGATTTTCCTTCATTTGAAATAGATGGTGAACTTTGGAGTAAAAGAGGAAATTTTGACAATATCTCAGGGATAGTGAGAAGACAGGTTCCTCATAAGGGTTGGGAACAACTTACTTATAATATATTTGAAGTACCAAATCAAAATGGTGGACTAAAGAAGAGACTAAATGTCTTAGAAACCTATTTAAACAATAATCCAAATAGATATATAAAAATCATAAAACAGACTATATGTAAAGATAAAAATCATTTAAAAACTTTTTTAAAAGAGATAGAAGACAAAGGCGGAGAAGGTGTAGTTGTAAGAAATGGGAAAGCCCAATATATAAGTAAAAGAACTTCACAAGCTCTAAAAGTAAAAAGTTTTGATGATGCGGAGTGTGAAGTGATTGGTTTTAATAAAGGCAAAGGAAAATATAAAAACTTAGTTGGTTCTATAATATGCAAGATGAAAAATGGACAAATTATCAATATAGGAAGTGGATTGAGTGATGAGTTAAGAAAAAAATTCTTAAAAAAAGATAAGTCAAAATTAGATATTATAAATGAACAACAAGTTTTAGAATTAGTAGTAAAAAACAGCATCAATGTAATAATTAATTGTGCAGCTTATACAGCAGTAGATAAAGCAGAATCAGATACAGAGTTAGCCAATGAAATAAATAATATTGCGGTTAAATATTTAGCAACAATTGCTAAAGAAAAAAATATAAAACTTATTCATATATCAACAGACTATGTTTTTGATGGCAATGCTTCTAAACCATATAAAGAAGATGATATGCCTAAGCCAAATAGTGTTTATGGTAGTACAAAACTTGAAGGTGGTGCAGGTTTTATTGGTTCGGCAGTTATTAGACATTTGATTGATAATACTAATCATAAAGTAATAAATATTGATAAATTAACTTATGCTGGTAACTTATCTACTTTAGATTCTATTAAAGATTCTCAAAATTATTTTTTTGAAAAAGTTGATATTTGTGATGAAATAAATATTAAAAGAATTTTTAGTGAATATCAGCCAAATGTAGTTATGCATCTAGCAGCAGAGTCACATGTTGATAGATCAATAACAGGCTCGGCTGAATTTATTCAAACAAATATTGTTGGTACATTTAATTTATTAGAACAAGCTAAAAATTATTGGCAACAATTAAGTGATGATAAAAAACAAAATTTCATTTTTCATCATATATCAACAGATGAAGTTTATGGTGATTTAGAAGGCACAGATGATTTATTCACCGAAACCACACCTTATGCCCCTAGTTCACCTTATTCAGCTTCTAAAGCTAGTTCTGACCATTTAGTTAGGGCATGGTTTCGCACTTATAATTTACCAATAGTAATTACTAATTGTTCAAATAATTATGGATCTTATCAATATCCTGAAAAATTAATTCCAGTTGTGATTTTAAATGCATTAGCAGGTAAGCCATTACCAATTTATGGCAAAGGGGAGCAAACTCGGGATTGGTTATATGTCGATGACCATGCAAGGGCCTTGGTATTAGTAGCAGAAAAAGGCAAGCTAGGTGATACTTATAATATCGGTGGATTTAATGAAAAGAAAAATATTGATGTTGTTAAAAGTATTTGTAAGTTATTAGATGAATTAGTACCTAAAGATAAACCATATCAAAATTTGATAGAATTCGTAACAGATAGATTAGGACATGATGTGCGTTATGCTATTGATGCTAGTAAAATCAAAAAAGAATTCGGCTGGACACCAAAAGAGACTTTTGATACTGGAATAGAAAAAACTGTTAAATGGTATTTGGATAATTTGGATTGGTGTGAGACGGTTAAATAA

Transcript

Sda_Sca01515.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00483	NTP_transferase	Nucleotidyl transferase	Family	Interproscan
PF01068	DNA_ligase_A_M	ATP dependent DNA ligase domain	Domain	Interproscan
PF01370	Epimerase	NAD dependent epimerase/dehydratase family	Family	Interproscan
PF14743	DNA_ligase_OB_2	DNA ligase OB-like domain	Domain	Interproscan
PF16363	GDP_Man_Dehyd	GDP-mannose 4,6 dehydratase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001509	Domain	NAD-dependent epimerase/dehydratase	Interproscan
IPR005835	Domain	Nucleotidyl transferase domain	Interproscan
IPR005888	Family	dTDP-glucose 4,6-dehydratase	Interproscan
IPR005907	Family	Glucose-1-phosphate thymidylyltransferase, short form	Interproscan
IPR012310	Domain	DNA ligase, ATP-dependent, central	Interproscan
IPR016040	Domain	NAD(P)-binding domain	Interproscan
IPR016059	Conserved_site	DNA ligase, ATP-dependent, conserved site	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR029319	Domain	DNA ligase, OB-like domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43532	GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003909	Molecular Function	DNA ligase activity	Interproscan
GO:0003910	Molecular Function	DNA ligase (ATP) activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0008460	Molecular Function	dTDP-glucose 4,6-dehydratase activity	Interproscan
GO:0008879	Molecular Function	glucose-1-phosphate thymidylyltransferase activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0009225	Biological Process	nucleotide-sugar metabolic process	Interproscan
GO:0045226	Biological Process	obsolete extracellular polysaccharide biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-