Gene detail

Detailed information of Sda_Sca01498.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_Sca01498.1	ACETOACETYL-COA SYNTHETASE	ptg000737l	1080477	1084795	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_Sca01498.1

ATGGTTGTACAAGATGTTGGTTATGATTTATTTTGTCCAATGTCATCTTTTTATCAATTATCTGATCAAAAAGTTCACACCCTATTTACTCACTTAGTAGTTAGGGAAGATGCTCATACTTTATATGGTTTTGTTACAAAAGATGAACGCAATTATCATTCGTTATGGCAATGGTCTATTGATTCTAAAGCTGATTTTTGGTCATTAGTTTGGGATTATTGTCAGGTGATTGGTGAGAAGGGAAAAGAAGTTTTAATTGAAGCAGAAGATATAAAGCAGTCTTTATGGTTTTCAGAAGCAAAAATTAATTATGCTCAAAATTTATTACGCTATAAAGATGACTCAGATGCAATTGTATTTTGGGGAGAAAATAAAGTTAAATATCGCTTATCACATAACGAATTATATGAAGCTGTATCTAAATGCCAACAAGCACTAATTAAATTAGGTGTTAGTAAAGGAGATAGAGTAGCCGGTTATTTACCTAATATGCCAGAGGCAATTATAACTATGTTAGCTACCACATCACTAGGGGCAATATGGAGTTCAGCATCACCAGATTTTGGTGTAGATAGTGTTGTTGATCGTTTTAGTCAAATTAAGCCTAAAGTTTTATTCTGTGTTGATGGTTATTATTACAATGGTAAAGTTATTGATTGTATGAAAAAAAATCTACAAATATGTGAATTATTACCAACAATAGAGCAAATAATAGTTATTGATTATGTTAGTGAGGCTAATGTAAATAAAACAGAGAAAATAACTAGTTGGTATAATTTCTTACAAGATTCTAAAGCGAACAAAGAAATTATTTTTACAGCTGTACCATTTAATTTTCCTTTATTTATTATGTTTTCTTCTGGCACTACTGGTAATCCTAAGTGCATTGTTCACAGCGTGGGTGGGACTTTAATTCAACATTTAAAAGAACATCAATTACACAGCGATATTCGTAATGGAGATAGAGTTTTTTACTTTACTACCTGTGGTTGGATGATGTGGAATTGGTTAGTTAGTTCTCTAGCTTCTGGGGCTACACTGTTATTATTTGATGGTAATCCATTTATTAGTGATGGCAAAATATTATTTGATTATGCCGATGCTGAAGCTATGACTCATTTTGGAACTTCTGCTAAATTCTTAGAAGCTTGTAATAAAAATAAGCTAACTCCAATAAAAACGCATAAACTAGATAAATTAAGAATGATACTATCTACTGGCAGTCCACTAACTGATATAAGTTATGATTACACTTATCAAAAAATTAAAAAAAATGTGCTGTTAGCTTCAATTTCTGGCGGAACAGATATTATTTCTTGTTTTGCTTTAGGATGTCCTATACTCCCTGTGTATAAAGAAGAATTACAATGTATTGGTTTAGGTATGGCAGTTAGTGTTTTTAATCAAAATGCTGAGTCTGTTACCCAAGAAAAAGGTGAGTTGGTTTGCACACAAACTTTCCCAGCTATGCCTATAGGTTTTTTTAATGATGAGGATGGTTCTTTGTATCATAAAGCTTATTTTTCTAAATTTGATAATATATGGTGTCATGGAGATTTTGTAACTTTAACAGCTAATAAAGGACTAATCATTCACGGTCGTGCTGATACTGTACTTAACCCTGGAGGAGTTAGAATTGGCACAGCGGAAATTTATCGTCAAGTAGAATATATTGATGAAGTTTTAGAATCAGTAGTTGTTGGTCAAGATTATAAAGCAGATGTTAGGATTGTATTATTTGTGAAATTAAGAGATAACATAAAACTAGATGAAATTTTAATAAATAAAATTAAACAACAAATCAAAAGAGGTGCGTCACCTCGCCATATTCCAAGCATAATTTTACAAGTAAAAGACATACCTCGTACAAAAAGTGGCAAGATTGTAGAAGTTGCTGTTAGCGCTTTAGTAAACGGTAGAGAAGTTAATAATATTGGCAGCTTAGCAAATCCAGAGGCACTAGATTATTTCAGAGCCCTCTACATAACTTAA

Transcript

Sda_Sca01498.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF01330	RuvA_N	RuvA N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000873	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR005914	Family	Acetoacetyl-CoA synthase	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR013849	Domain	DNA helicase, Holliday junction RuvA type, domain I, bacterial	Interproscan
IPR020845	Conserved_site	AMP-binding, conserved site	Interproscan
IPR042099	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR045851	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42921	ACETOACETYL-COA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0009378	Molecular Function	four-way junction helicase activity	Interproscan
GO:0030729	Molecular Function	acetoacetate-CoA ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-