Gene detail

Detailed information of Sda_Sca01039.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_Sca01039.1	ARGININOSUCCINATE LYASE	ptg000737l	248064	252269	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_Sca01039.1

ATGAATTCAAAAAAGCAAAAATTTAATAAATCTTGGGGCGGGCGTTTCAAAGAAGAGACTAACTCTTTTGTTAAAACATTCGGAGCAAGTGTTACTTTTGATAAAACTCTTGCTAAATACGACATTCAGGGTTCTGTGGCTCATGCAACTATGTTAGCTAAAGTAGGGGTTATCACAGATGAAGAAAAAGATATAATTATTAAAAATTTAAAAATAATCTTAGAAGAAATTAACAATAACACATTCGATTGGTCAATTGATTTAGAAGATGTACATATGAATATTGAATCAAGATTAGTTGACTTATGTGGTGATACTGGCAAAAAACTGCATACTGGTAGATCAAGAAATGACCAAGTAGCAACTGATATAAGATTATATTTAAGAGCAGAAAGTAAAATAATTTTAGAGCAAATACAAAATTTACAAAAAGTACTTTTAGATTTAGCAAGTGAACATACAACGACAATAATGCCTAGTTTTACTCACTTACAAGCAGCACAGCCTATTAGTTTCGCACATCATTTAATGGCATATTTTGAAATGTTCACTAGAGATTACGAACGCTTAGAGGATTGTTTAAAAAGAATAAATTCTTCCCCATTAGGTTCAGCAGCACTTGCTGGCACTACTTACCCAATAGATAGAAGATATACTGCTAAATTATTAGAGTTTGATAGAGTTTGTGAAAATTCATTAGATGCTGTTAGTGATAGGGATTTTGTAATTGAATTTAATAACTTTGCTTCAATACTTATGATGCATTTATCAAGGTTTTCTGAGGAAATTATTTTGTGGGTTAGTGCACAATTTAAGTTTATTGAGTTATCTGATAGTTTTTGTACTGGTTCTTCGATTATGCCACAAAAGAAAAACCCAGATGTGCCTGAGTTAGTAAGAGGTAAAACGGCAAGGGTTTATGGTAATTTATTATCAATTCTTACCCTAATGAAGTCACAACCCTTAGCTTATAATAAAGATAATCAAGAAGATAAAGAGCCTTTATTTGATAGTGTTATAACTATTCAAGATTGTTTAAAAGTTTTTGCTGATATGTTATTAGAAGTGAAAGTTAATAAAAGTATAATGTTAAAAAGTGCTAAGTTAGGATTTACTACAGCCACAGATTTAGCTGATTATTTGGTAAAAAAAGGAATTGCTTTTAGAGATGCTCACGAAATAGTTGGAAAAGTAGTTGCATATTGCCTAGATAACAATAAAATACTCGATGAGATTAGTTTAGAAGAATTACAACAATTTAATGAAAATATTAATGATGATGTATTTAAAGTATTAAGTTTAGAAGGTTCACTTAATGCTCGTAATCATTTAGGTGGTACAGCTCCAGAGCAAGTGCTAAATGCTAATGAAGAAATAATCCCATTTAAAACTATTAATAAAGTCCTGCAAGCACATCAAAAAGCAAGCTTAGATGCACTGAGAATCTTAATGCATAAGTTATATTTAAGAAATCCAAAAGAGTTAAAAAAAGGCCAACATAGTTTAAAGCAAGCTCAAGTATTAGCACTACAGACTCTTAATCGCCAAACTCAAGTTGAAGATTTAAATAATACTCGTGGTAGAGATAGTGTAAAGCTTGCATTTGAAAAAACCTATACAGGTGATAGAATCCTTGCTTTGATATATGGTTTAACATCTATGTTAATGGATGCATATAAAAACAAACAATTAGTTGATGAAGATGGAACACCTGAATTTTCTGTCGAAATTTTAAAAAGACTCAACGAACAATTTAATATTATCGCTGTTTTTTGTCAAAGTGATAAACCAAAAGGTCGAGGTAGGAAAATAACTGCTTGTGCTGTTAAAGAATATGCCTTATTGCACAATCTACCAACATATCAACCAGAAAAATTTAATAATACAGAGAACCTAGCACTGTTTAAATCTCTTAATACCGATGTAATGGTAGTTGTTGCTTATGGGCAAATACTTACTAAAGAGTTTTTAAATTTTCCTAAATACGGTTGTTTGAATATTCATACATCGCTACTACCTAGGTGGCGTGGTGCAGCACCAATTCAAAGAGCAGTACTCGCAGGTGATAGTCAAACTGGTGTGAGTATTATGCAAATGGATGAAGGTTTAGATACTGGAGATTTAATAGCTAAAAAAACTTGTGATATTGAAAGTAACGACACATCAATAAGTTTATATAATAAATTACAAAAACTTAGTGCAAACTTGATTGTTGATACTTTAAATAACATACAAAACTTAACAGCAACTAAACAAGATGAAGAAGGTATAACTTATGCAAAAAAACTTACTAAAGATGAAGCTTGGATAGATTGGAGTCAATCATCAACACAAATCAATCAACAAATACGGGCATTTAACCCATACCCAATCGCACAATCATTAGCAACTAGTGATAAATTTCAAGAGCAAATAATTCGCATTTATGAGGCTGAAGTTTTGAAAAACAAAGCAAATGGCATTAATACAGCTGATTGCATTGCTGTGTTATTTAAGGATAAATATATTTTGTTTCTCCCAGCAAATGATAAAAATAAAGAACTATGGCTTGGCAAAACACTAACTGCAAAAGAGGCTATAACTAACTTTGCAGTTGATAAAACTCACACTACAAATACCATAAATAAAGTACTACCACAATTATTAAAAAATATAACTACAATTCATTACAATATAGATGAGAATATAGTTATTGATAAATTAATTAATAATCAACAAAAAACAATAATCCCCTTAAAAAACACCGTAGAAAAAATGCGAGTGATAAAAGATAAAGAGGAAATAAAATTAATGGAGCAAGCAGCACAAATATCAATAAAAGCTCATAAGCAGGCGATGAGAGAAGTGAAAAATTGCACAAATGAGGCACAAATAGCAGCGATATTTGATTATCAATTTACATATAATAATAGCACTTGGGCATATCCACATATTGTAGCTAGTGGGCAGAATGCTTGTGTATTACATTATACAAATAATAATGCAGAGATTAAAAATGGCGATTTGTTATTAATAGATGCAGGTTGTGAGGTTTGTGGTTATGCCTCAGATATTACTAGAACATTTCCAGTGAATGGTCGATTTAACAAAGAGCAAAAAGAGATTTATAATTTAGTATTATTAGCACAAAAAAATGCCATAGAAATTATCAAGCCAAATATATTAATCACGGACTTACACAAAACAGTGGTTAAAACCCTAACAACAGGCTTAGTAGAATTAGGATTATTAATAGGAAGTGTTGAGGATAATATTAAAAATAGTAAGTATATGGATTATTTCAAACATGGTACAGGGCATTTTCTCGGACTTGATGTGCACGATGTAGGGGATTATAAATCAGCAAACAAACCACAAAAGTTAAAACAAGGTATGGTTATGACCATAGAACCAGGAATATATATCACAGCAAATAAAAACATCGATAAAAAATGGTGGAATATCGGTGTGAGAATCGAAGATGATATTTTAGTAACAAAAAATTCATATCAAAACCTAACTCAAGACTTGGTTAAAGAAATAAACGATATAGAAAAATTAATGAACTCTTAA

Transcript

Sda_Sca01039.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00206	Lyase_1	Lyase	Domain	Interproscan
PF00551	Formyl_trans_N	Formyl transferase	Domain	Interproscan
PF00557	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF02911	Formyl_trans_C	Formyl transferase, C-terminal domain	Domain	Interproscan
PF05195	AMP_N	Aminopeptidase P, N-terminal domain	Domain	Interproscan
PF14698	ASL_C2	Argininosuccinate lyase C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000362	Family	Fumarate lyase family	Interproscan
IPR000994	Domain	Peptidase M24	Interproscan
IPR001131	Conserved_site	Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site	Interproscan
IPR001555	Active_site	Phosphoribosylglycinamide formyltransferase, active site	Interproscan
IPR002376	Domain	Formyl transferase, N-terminal	Interproscan
IPR005793	Domain	Formyl transferase, C-terminal	Interproscan
IPR005794	Family	Methionyl-tRNA formyltransferase	Interproscan
IPR007865	Domain	Aminopeptidase P, N-terminal	Interproscan
IPR008948	Homologous_superfamily	L-Aspartase-like	Interproscan
IPR009049	Family	Argininosuccinate lyase	Interproscan
IPR011034	Homologous_superfamily	Formyl transferase-like, C-terminal domain superfamily	Interproscan
IPR020557	Conserved_site	Fumarate lyase, conserved site	Interproscan
IPR022761	Domain	Fumarate lyase, N-terminal	Interproscan
IPR024083	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan
IPR029149	Homologous_superfamily	Creatinase/Aminopeptidase P/Spt16, N-terminal	Interproscan
IPR029419	Domain	Argininosuccinate lyase, C-terminal	Interproscan
IPR036005	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR036477	Homologous_superfamily	Formyl transferase, N-terminal domain superfamily	Interproscan
IPR041711	Domain	Methionyl-tRNA formyltransferase, N-terminal domain	Interproscan
IPR044135	Domain	Methionyl-tRNA formyltransferase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43814	ARGININOSUCCINATE LYASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004056	Molecular Function	argininosuccinate lyase activity	Interproscan
GO:0004479	Molecular Function	methionyl-tRNA formyltransferase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0030145	Molecular Function	manganese ion binding	Interproscan
GO:0042450	Biological Process	arginine biosynthetic process via ornithine	Interproscan
GO:0070006	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0071951	Biological Process	conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-