Gene detail

Detailed information of Sda_Sca00267.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_Sca00267.1	ADENYLOSUCCINATE SYNTHETASE	ptg002471l	18337	24502	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_Sca00267.1

ATGGCACAAAATGTAGTAGTAATAGGCACGCAATGGGGCGACGAAGGTAAAGGGAAAATCGTTGATTTGATTACAAATAATATCGCAGCAGTTGTACGATTTCAAGGTGGACATAATGCTGGTCATACCTTGATTATCAATGGAAACAAAACAGTCTTACACCTAATCCCATCAGGTATTCTACGCGATAATGTTAAGTGTTTAATCGGGCATGGTGTTGTTGTTTGTCTTCCTGCTTTATTAAAAGAAATTAAAGAATTAGAAACATCAGGTATTAATGTTAGAAATCGTTTAAAAGTAAGTATGTCTTGCCCTTTAATCCTGCCACATCACATAGCACTAGATAATGCTAGAGAAAGTAATCTTGGTAAAGAAGCTATTGGCACTACTGGTAATGGTATAGGTCCAGCATATGAAGATAAAGTATCAAGAAGAGGCATAAAAATTGCTGATTTATTAGACACTGAATTATTTGCTAAAAAGTTAAAAAAAGTTATGGAATATCATAATTTTATTTTGACTAATTATTACAAATGTCAGAGTATAGATTATGAAAAAACACTTACAGATGTATTAGTTCAAGCTAGTCAGATAAAAGATTTAATCTCAGATGTTTCTGCTGAAGTAAATGCTTTAAATGAGAATGGAGAAAAAATTCTTTTTGAAGGTGCTCAAGGAGCATTACTAGATATTGACCAAGGGACTTACCCATTTGTAACATCATCAAATACCACCTCAGCAGCCGCAGCACTAGGTAGTGGCTTAGGAATATTAAATATTAATTATGTTTTAGGTATTACCAAAGCATACACAACTAGAGTAGGAGCAGGACCATTTCCCACTGAGTTAATTTATGATGTTGCTAGTCAAAAGGGTGATAGCATTGGTCGTGAATTAGGTGAGAGAGGTTTTGAATTTGGTGCTACCACAGGCAGACAGCGTCGCTGTGGTTGGTTAGATATTGTTGCATTAAAAAGATGTTTTCAAATCAATAGTGTTAGTAGTATTTGTTTAACAAAATTAGATGTTTTAGATAATTTAAAAGAATTAAAAATCTGTATTGCTTATGAGATTGACGGTGTTCAAACAACACAAATGCCATTTTCAATGAGTGATTTTGCCAAAATTAAACCTATTTATATTACTTTAGATGGTTGGTTAGAGCCTACTGTTGGTGTTAAGTCTTTAGATGACTTACCAAAAAACGCTTATATTTATATTAAAAAAATCGAAGAATTAACTAATCTTAAAATAGAAACTCAAAGAAAAGCCTTCAACCATCGCCTAGCTGCAATGGTTCGTGATAAACAACTTAGTTATCACAAAAGCGTATTTAAAATATTTTGTGATAATTCTGTATTAGAAGGTAAAGTTATAGCTAATCCTAAAGGTTTTGGTTTTGTTGAATTAAAAACTAACAATAAGAAAAAATCCAAAGAAAAAGACAAAGACCTACGACTTTCAAAGCAACAAATGGCCTTAGTATTTCACGGTGAAGAAGTTAAAGTTAGATTATTAGCTAAAAGTTATTCATCACTTGAAGCTGAGGTTGTCAATGTTACTAAAAGAATTAAAACACTAGTTGGTGTTATTGTTGTTGAAGATGATAAATGTTACTTAGATGTTGATGATAAAAGAATAATTCAAAAAATTAGTTTACCTCACGAAAAGCCAACAAAAACAAAAAATGTAGTTTTAGTTGAGATTGAAAAATACCCAACTTTTAGCAATATTGCCACAGCTAAAGTTATAAAAGTTATTGGTGAATATTTATCAGAAGGTGTTGAAGTTGACTCAGCAATCGTGCGTTATCAAATTCCTAATGAATTTAGTCAAGATTGCCTAAACCAAGCAGATAAATTACCAAAAAAAGTCCTAAAAAGTGATGAGAAAAATAGAGTTGATTTAACAAAACTACCTTTAATAACTATTGATGGTGCGGATTCACGAGATTTTGATGATGCCGTTTTTAGCAAAAAAATCAAAAATGGTTTTAAACTATATGTAGCAATAGCTGATGTGTCTTATTATGTAGAGGAAAATAGTGCCTTGGATAAAGAAGCACTAGATAGAGGAAACTCTGTTTATTTTCCTAATCGTGTTGTGCCTATGTTGCCTGAGAGTATATCTAATGGTTTATGTTCACTTAACCCTGATGTTAAAAGATTATGTTTAGTTTGTGAAGTTGATGTTGATTTAACAGGTGAAATTTTAGCTTATAAATTCTACGAAGCAGTTATGTTATCAAAAGCTAGATTAACATATAATCAAGTTGAAGACTTTGTAGTAAATAACAAAAAACAAGATTTTAATAAAGAAGTAGCAAAGAATATTACAAACCTCAACGAACTATACAAAATATTAAATAAAAAGCGTATTAAAGATGGCACAATAGAATTCGAACTAGATGAAAGTTTATTTATATATAACGATAAATTAAAAATAGATAAAGTTACAATCAAAAAACGCCTAAATTCATACAAATTAATTGAAGAGTGTATGTTACTTGCTAATAAAGTTAGCGTTATGTTTTTAGAAGATAATAAGACCCCATTACTATATAGAGTGCATCCAAAGCCAAAAGCAGAAAAGGTTATTAGTAGTAATAGTTTTCTAAAATCATTTGGTTTATCATTACCTATTGACAAGGATTATTCAACACAAGATTTTCAAAAAGTTTTTAATAAAGCAAAAAAACTAGATAATTGGCAAGTTATACAAACAGTCCTATTAAGAACTATGCAACAAGCTATTTATACTCCTAATAACCAAGGGCATTTTGGTTTGGGTTTTGATAAATATTCTCACTTCACTTCACCAATTAGGCGTTATCCTGATTTATTATTACATCGTGCTATTAAAAATGTATTAAATAATAAAAAAATGACAACTAAATTACAAAATAGCTTAGTTGCTTATGCTGAGCATTGTTCTTTAACAGAACGCCGAGCTGATGAAGCTACAAGAGATGTGATGCAATTTTTAAAATGTGTTTATATGTTAGATAAAGTTGGTGAAAGTTTTACAGGATACATAATAGAGCCAATTGTTGCAGTTGTTCCTGCATTTGACCCAGAAATTGCTGCGAAAAGACCTGAAGAGCCTAATGCTGCCATACCTAAACCTCCACGAATTCTACCAATACAAGCAAAAGCAAAATCTGATAATCTTTTAGCAATCCCAGCAGCATTGATTAAATCACCTGTTAAGATAAATAAAGTTTAA

Transcript

Sda_Sca00267.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00709	Adenylsucc_synt	Adenylosuccinate synthetase	Domain	Interproscan
PF00773	RNB	RNB domain	Domain	Interproscan
PF08206	OB_RNB	Ribonuclease B OB domain	Domain	Interproscan
PF17876	CSD2	Cold shock domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001114	Family	Adenylosuccinate synthetase	Interproscan
IPR001900	Domain	Ribonuclease II/R	Interproscan
IPR004476	Family	Ribonuclease II/ribonuclease R	Interproscan
IPR011805	Family	Ribonuclease R	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR013223	Domain	Ribonuclease B, N-terminal OB domain	Interproscan
IPR018220	Binding_site	Adenylosuccinate synthase, GTP-binding site	Interproscan
IPR022966	Conserved_site	Ribonuclease II/R, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR033128	Active_site	Adenylosuccinate synthase, active site	Interproscan
IPR040476	Domain	RNase II/RNase R, cold shock domain	Interproscan
IPR042109	Homologous_superfamily	Adenylosuccinate synthetase, domain 1	Interproscan
IPR042110	Homologous_superfamily	Adenylosuccinate synthetase, domain 2	Interproscan
IPR042111	Homologous_superfamily	Adenylosuccinate synthetase, domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11846	ADENYLOSUCCINATE SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004019	Molecular Function	adenylosuccinate synthase activity	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0004540	Molecular Function	RNA nuclease activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006164	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0016070	Biological Process	RNA metabolic process	Interproscan
GO:0044208	Biological Process	'de novo' AMP biosynthetic process	Interproscan
GO:0046040	Biological Process	IMP metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-