Detailed information of SQW42HX01_g5911 in Zoroaster sp. YZ-2022 Gene info
Gene IDAnnotationChromosomeStartEndStrand
SQW42HX01_g5911SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATEDHiC_scaffold_22428240624326724+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyULD|UBL|NEDD8
Ubiquitin FamilyULD|UFD/UBQ|UBQ_Other
Ubiquitin FamilyULD|UFD/UBQ|UBQ_PIM

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00240ubiquitinUbiquitin familyDomainInterproscan
PF01805SurpSurp moduleFamilyInterproscan
PF12230PRP21_like_PPre-mRNA splicing factor PRP21 like proteinFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000061DomainSWAP/SurpInterproscan
IPR000626DomainUbiquitin-like domainInterproscan
IPR022030DomainSplicing factor 3A subunit 1, conserved domainInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR035563DomainSplicing factor 3A subunit 1, ubiquitin domainInterproscan
IPR035967Homologous_superfamilySWAP/Surp superfamilyInterproscan
IPR045146FamilySplicing factor 3A subunit 1Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR15316SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0045292Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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