Gene detail

Detailed information of SQW42HX01_g34942 in Zoroaster sp. YZ-2022 Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SQW42HX01_g34942	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	HiC_scaffold_20	7005431	7006463	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SQW42HX01_g34942

ATGGAGACCTACTCCGACCAATCAGAAACTGACACCAGTTGCTGTGTACGAGTCACTGGGCCAAACATGGGTGGCAAGTCCACACTAATGAGACAAGCGGGCCTGATAGTCATTATGGCACAACTCGGTTGCTACGTGCATCGCTGTCGGCTCACACCCGTGGATTGGGTCTTCACACGGCTCGGCGCTAGAGACAACATACTCTCTGGTAAGTGGTGGTACGGGGTCCCAGAAATAAATAACCCATAGATATACATTAGGTCGTTTAATAACGAGTTGTTTGAAACCATGGCCATCAACGGGTTCTCTTAAACTATGGGCAGAGACTGGTATAACATGTTCTGTGAAACCATGGGCAGAGACTGGTATAACAGGTTCTGTGAAACCATGGGCACAGTCTAGTAGTATAACAGGTTCTGTGAAACCATGGGCAGAGACATGTTCTGTGAAACCGTGGGCACAGACTGGTATAACGGGTTCTGTAAGACCATGGGCACAGACTGGTATAACAGGTTCTGTGAAACCCTGGGCAGAGACTGGTATATCAGGTTCTCTGAAACCATGGGCACAGACTGGTATAACAGGTTCTGTGAAACCGTGGGCAGAGACTGGTATAACAGGTTCTGTGAAACCATGGGCAGAGACTGGTATAATGGGTTCTCTGAAACCATGGGCAGAGACTGGTATAATGGGTTCTCTGAAACCATGGGCAGAGACTGGTATAACAGGTTCTGTGAAACTGTGGGCAGAGACTGGTGTAACAGGTTCTGTGAAACCATGGGCAGAGACTGGTATAACAGGTTCTCTGAAACCATGGGCAGAGACTGGTATAACAGGTTCTTTGAAACCATGGGCAGAGACTGGTATAACGGGTTCTCTGAAACCATGGGCAGAGACTGGTATAACGGCTTCTGTGAAACCATTGGCACTGACTGGTATAACAGGTTCTGTGAAACTGTGGGCACCGACTGGTAGGTCAATACATGGAATTATTTCAGTTCAACACAATCTTCATGATGAAGGGGGTACCTAGATGGAGACCTACTCCGACCAATCAGAAACTGACACCAGTTGCTGTGTACGAGTCACTGGGCCAAACATGGGTGGCAAGTCCACACTAATGAGACAAGCGGGCCTGATAGTCATTATGGCACAACTCGGTTGCTACGTGCATCGCTGTCGGCTCACACCCGTGGATTGGGTCTTCACACGGCTCGGCGCTAGAGACAACATACTCTCTGGTCGTTTAATAACGAGTTGTTTGAAACCATGGCCATCAACGGGTTCTCTTAAACTATGGGCAGAGACTGGTATAACATGTTCTGTGAAACCATGGGCAGAGACTGGTATAACAGGTTCTGTGAAACCATGGGCACAGTCTAGTAGTATAACAGGTTCTGTGAAACCATGGGCAGAGACATGTTCTGTGAAACCGTGGGCACAGACTGGTATAACGGGTTCTGTAAGACCATGGGCACAGACTGGTATAACAGGTTCTGTGAAACCCTGGGCAGAGACTGGTATATCAGGTTCTCTGAAACCATGGGCACAGACTGGTATAACAGGTTCTGTGAAACCGTGGGCAGAGACTGGTATAACAGGTTCTGTGAAACCATGGGCAGAGACTGGTATAATGGGTTCTCTGAAACCATGGGCAGAGACTGGTATAATGGGTTCTCTGAAACCATGGGCAGAGACTGGTATAACAGGTTCTGTGAAACTGTGGGCAGAGACTGGTGTAACAGGTTCTGTGAAACCATGGGCAGAGACTGGTATAACAGGTTCTCTGAAACCATGGGCAGAGACTGGTATAACAGGTTCTTTGAAACCATGGGCAGAGACTGGTATAACGGGTTCTCTGAAACCATGGGCAGAGACTGGTATAACGGCTTCTGTGAAACCATTGGCACTGACTGGTATAACAGGTTCTGTGAAACTGTGGGCACCGACTGGTAGGTCAATACATGGAATTATTTCAGTTCAACACAATCTTCATGATGAAGGGGGTACCTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00488	MutS_V	MutS domain V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000432	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0032301	Cellular Component	MutSalpha complex	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-