Gene detail

Detailed information of SQW42HX01_g1923 in Zoroaster sp. YZ-2022 Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SQW42HX01_g1923	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	HiC_scaffold_1	55217065	55219361	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SQW42HX01_g1923

ATGGCGGAAGGAGGGGACGCCATGTCTGCAGTCTTGGATAGATTCGGCGAGGACTACCTGAATTGCTCGATATGTCACGAGCGATACAAACGGCAAAAATACTCAACTGCCTTCACAGCTTCTGCGAGGAATGTCTCGGAAAGTACCAACCTTCACAGGGGCTGGTCAAGCTTGCTTGTCCCGTCTGTCGACAGGAGACCGTAATCCTGGAAGGGGTATCCGGGACTCAAGACGAACTTCAACCTGAGTGGGATGGTGGAGGCCTTTAAGCAACCGGAGATGATCAAAGCCAGCGTAGAATCAGTTCTCTGGACTCCATTGAATCGGGTTCCGACCCCAACACTGTACCGTCCTGGAGTGTCGGAAACACCCAGGGAGAAAACATGGTTCTACTGTGAGCCCTGCCAGGCCCTAGTCTGCCAGGTTTGCACAGTTTAAACACACCGGGGCCACGAGTTCCAAGAAATCGACGTTGCTGCGACCACTTGTAGAGACTCGCTCCGCGTGTTCTTCCCACGGATCGAAGACCTCTTGGTCGGCATTAAAGATGAGTTAGAGGTTGCCGAGAATGTGAGTTGCCGGGTAGCCGCAGCAGCCGATAAGAGCAGAGAGGAGGTGGAGGAACGTGCTGCTGCGGCGATGGCCATGGTGATTGATGCTAGGCAACGCATCCTCGATGAGATAACCACAACCGAGACGGAAGCAACCAAGCCGATGAAGGATCGAAACAAGCGTCTGACTGTGTTGAGGGACAGGATGCAACACTCTGTCACGATCTCGGAACACTTGACCAGCAACGCCACGGACGAGGACCTTCTGTCACTCTTCCCGATAATACAAGCGGACCTGAAAAGACTGACCGACCGTCAGCAGACACCGCCGGACATCAATCCTCCGAAAGCCTCGGTCATGAAGCTCTTGCCGCCCACGAGGCCGACGGACATCAACCTTGGGAGGCTCGTGATGAAAACCGAGATATGGGAGATGAAGACAAGAGTTGGAAAGAGCGGCTGTGACAAGGAAGATTTTGACGGTGTGCTAGGGCATCACTGTGTGCTCCAATGGTGATATAGCTGTAGCTGATATGGGCATGTGGACCAAAGGAATAACTGTATTCACATCAGAATGGGTCTACAGTACTGCAATTAAGTTTTCTGACAGTAAGTACATTCAGAATATAGATGGCCTGCGCATTAGGAATTACTTAACTTGAAACAATGCTATAACACTTTATGAATATCTATATTGAAACCACTTTGCTACCTTCAGATGTCAATATGTCAATGTGTGAGTTTAACTGTTTTTTGGAACTTTTGTTAGCATGTACGCTATAAAAATGTGGACAGTTAAGAGCAAATCTATGATGTCATAGTTGAAACGGTTCATTCATCATGGCTGGTTTTTATTCCTGGTCATTTCACGAATCTGTTCTTTTAACTATAAAAACATTATTGGTTTCCTTATATAAACAGAGTGTTTGTTTTCAAGTTTTAAAAAATCTTGGGCTGGAACCCCCACCCCACCCCCTAAACAAAATACTGACATAAATTACATGACATAATAGTGCATTTAGTGCATTTGTGTTTTAACAACATTTAAACATTTGTATCTCTACTGCTGAATACATATTTTTTTAATAATGAGCCTTTTTTTCTTTTTTCTTTTTTCCAGAGCCACGAGACGTAGCATCCGTGAATGATTGTCTTGTGGTCGCAGACGACACCAGTACAGTCAAGGTATACAACTCCGAAGGGCTGGCCTTCCAGTTCGAGACAACCTCAAAAGTCACCGGCAACCGCGTTAGCAAAACCCCGGTCAACATTGTCAGCGTCGCGGTCAAGAAAAACGGCACCATCGTAGTCGGGGACGTCAAGAGAAAAGTCGTCACGGAACACCGTTCTTCAGACGGCGCACTGTTGCGCACGATTCGGACCAACATACCCCCGTACTTCTTGGCCGTAAACGACGCGGAGCACATCCTACTCAGCGGTCTAGACACGGGGAAGGTCGAAGAGATTGACGGCGACGGCGAGACAGCATTCACGATAAACCCCAGTATAAAAGGGGAGGACGACGTGTCGTGTCGGGGTGTGTGCTGCAACAAGGATGGGGGTTTCTACGTCGTGGTGCAAGGGAGGAATTCAAACTTTGGTCACATCCACCAGTATGAATCGACAGGCGAGTTCCTGAGGTGTGCAGCCACGGGTCTGTTCGACCCTAACGGCATTACGCTGACCTCCAACGACGAACTAGCCATTGCTGACTGTTTCTCTGTTAAGGTTTTCAGAAGAATCTAGATGGCGGAAGGAGGGGACGCCATGTCTGCAGTCTTGGATAGATTCGGCGAGGACTACCTGAATTGCTCGATATGTCACGAGCGATACAAACGGCAAAAATACTCAACTGCCTTCACAGCTTCTGCGAGGAATGTCTCGGAAAGTACCAACCTTCACAGGGGCTGGTCAAGCTTGCTTGTCCCGTCTGTCGACAGGAGACCAGACTCGCTCCGCGTGTTCTTCCCACGGATCGAAGACCTCTTGGTCGGCATTAAAGATGAGTTAGAGGTTGCCGAGAATGTGAGTTGCCGGGTAGCCGCAGCAGCCGATAAGAGCAGAGAGGAGGTGGAGGAACGTGCTGCTGCGGCGATGGCCATGGTGATTGATGCTAGGCAACGCATCCTCGATGAGATAACCACAACCGAGACGGAAGCAACCAAGCCGATGAAGGATCGAAACAAGCGTCTGACTGTGTTGAGGGACAGGATGCAACACTCTGTCACGATCTCGGAACACTTGACCAGCAACGCCACGGACGAGGACCTTCTGTCACTCTTCCCGATAATACAAGCGGACCTGAAAAGACTGACCGACCGTCAGCAGACACCGCCGGACATCAATCCTCCGAAAGCCTCGGTCATGAAGCTCTTGCCGCCCACGAGGCCGACGGACATCAACCTTGGGAGGCTCGTGATGAAAACCGAGATATGGGAGATGAAGACAAGAGTTGGAAAGAGCGGCTGTGACAAGGAAGATTTTGACGAGCCACGAGACGTAGCATCCGTGAATGATTGTCTTGTGGTCGCAGACGACACCAGTACAGTCAAGGTATACAACTCCGAAGGGCTGGCCTTCCAGTTCGAGACAACCTCAAAAGTCACCGGCAACCGCGTTAGCAAAACCCCGGTCAACATTGTCAGCGTCGCGGTCAAGAAAAACGGCACCATCGTAGTCGGGGACGTCAAGAGAAAAGTCGTCACGGAACACCGTTCTTCAGACGGCGCACTGTTGCGCACGATTCGGACCAACATACCCCCGTACTTCTTGGCCGTAAACGACGCGGAGCACATCCTACTCAGCGGTCTAGACACGGGGAAGGTCGAAGAGATTGACGGCGACGGCGAGACAGCATTCACGATAAACCCCAGTATAAAAGGGGAGGACGACGTGTCGTGTCGGGGTGTGTGCTGCAACAAGGATGGGGGTTTCTACGTCGTGGTGCAAGGGAGGAATTCAAACTTTGGTCACATCCACCAGTATGAATCGACAGGCGAGTTCCTGAGGTGTGCAGCCACGGGTCTGTTCGACCCTAACGGCATTACGCTGACCTCCAACGACGAACTAGCCATTGCTGACTGTTTCTCTGTTAAGGTTTTCAGAAGAATCTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR002321	Family	Cytochrome c, class II	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0009055	Molecular Function	electron transfer activity	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-