| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| SQW42HX01_g14416 | VACUOLAR PROTEIN SORTING 54 | HiC_scaffold_6 | 1421049 | 1436284 | + |
| CDS | |||||
| null |
| Transcript |
| null |
| Protein |
| null |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07928 | Vps54 | Vps54-like protein | Family | Interproscan |
| PF10475 | Vps54_N | Vacuolar-sorting protein 54, of GARP complex | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012501 | Domain | Vacuolar protein sorting-associated protein 54, C-terminal | Interproscan |
| IPR019515 | Domain | Vacuolar protein sorting-associated protein 54, N-terminal | Interproscan |
| IPR039745 | Family | Vacuolar protein sorting-associated protein 54 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12965 | VACUOLAR PROTEIN SORTING 54 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000938 | Cellular Component | GARP complex | Interproscan |
| GO:0006896 | Biological Process | Golgi to vacuole transport | Interproscan |
| GO:0019905 | Molecular Function | syntaxin binding | Interproscan |
| GO:0042147 | Biological Process | retrograde transport, endosome to Golgi | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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