Gene detail

Detailed information of SKAU_T00428490 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00428490	PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE	JAINUF010000034.1	232414	245064	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00428490

Transcript

SKAU_T00428490

ATGTCACAGCCAGAGTCTGAATCTCCCAAAAAGAAGGTGTCCTTTCGTGGCCGCAGCAATGTCCCAGTGGCAAACTCCAATGCTGAAGGGGAGGACGCCCCAGAGTTTGAGCCTTTTGGGCTAATGCCCCGTGGACCTCCCCCACTGGCAGAATTCCTGGACATCTGGGACGTGAACATGCTCTGCAAGCCAAACGAAAGCAACAAGAAGGAGCACCACACCTCCCTGTTCTCCAACCCCCTACTCGTCGTGCGCAGGGCCCAGGAGTTCCAGATCAGGATCACCTTTAACCGCGCCTACGACCCTTCCAAGGACCAGTTCCTGCTGGAGTTTGTCATCGgtgccaGCCCACAGATGAGCAAGGGCACCTATATCCCCGTCTTCCCGGACCCTGGGAGGAGGGGGCTCTGGAGGGGGCGTATCCTGGACAGCATCGACAACATGGTCACAGTGGGAATCACCGCAGCGCCAGACAGCATTGTGGGAAAGTTCCGCACCTATGTGGCGGTCCTGACCCCGTACGGAATCCGTAGGACCCGGCGAGAACCCAAGCGAGATGTCTACATCCTCTTCAACCCCTGGGCGTCAGATGACCCTGTGTTCCTGAAGGAcgaggcagagagaggggagtACGTCCTGGAAGAGTCTGGGATCGTTTACCACGGGGAGGCCAGCGATGTTTCTGCAAGGCCGTGGAATTTTGGGCAGTTTGAGTATGGAGTTCTTGATGCCTGTCTCTATGTCATGGACCGAGCTGAGATGCCCATCACCAACAGGGGAGATCCAATCAAAGTTGCCCGCAAGGCATCTGCGGCGATAAACTCCAAGGATGACGACGGAGTGCTGGTGGGGAACTGGAGCGGGGACTACTCGTACGGGGTGGCACCCACATCCTGGACGGGCAGCGTGGAGATCCTGATCACCTACGCCGCCACCAAGCAGCCCGTGGCCTACGCGCAGTGCTGGGTCTACGCTGCGGTCTTCAACACGTTCCTGCGATGTTTAGGGATCCCAGCCAGGGTGGTCACCAACTTCTATTCCGCCCATGACAATGACGGCAACTTAAAAACCGACATCATTGTGGACGAGGAAGGGAAAGTGGACAGAGTTCGCACCAAGGATTCCATTTGGAACTACCACTGCTGGAACGAGTGCTACATGACAAGGCCCGACCTTCCCCAAGGCTTTGGGGGCTGGCAGGCTGTGGATTCAACCCCCCAGGAGACCAGCGATGGACTGTACCGCTGTGGTCCTGCATCTGTCCAAGCCATCAAACATGGACATATTTGCTATCCCTTCGATGCGCCTTTTATATACGCTGAGGTGAACAGCGATGTCGTTTTTTACAAGCGGGACAAGAGCGGGAACTTGGAGGCGGCTAGAGTGAACAGGTCCCATGTGGGACGCATGGTGCTGACTAAAGCCATTGGTGGAGACCAGCCCTTTGAGCTCACAAACCAGTACAAATTCGCTGAAGACACCGAGGAGGAGCGCACCGTTTCGGCGAAAGCGGAGGGGTATGGCATGGACAGGCCAAAGGTGAACTACCCCGAGCCTGACGTGAAGGTCGAGGTGTTGGCACAGGAAGTCAGCATAGGGGACGACTTCCAGCTCGACCTGGAGTTCAAGAACCACAGCGGGGAGCACCGCACCATCAACGCCTTTGTCACCGGCTATGTGGTCTACTATACCGGCGTCACTAGTGGCGAGGTGAAGTACGAGACCCTGAAGGTGACCTTGGACCCCTGGCAGACCGAGCGGGTCTCAGTGGATGTGCACTCTAAAGATTACATGAGCAAGCTGGTGGAGCAGTCCAACCTCCACTTCATGGTGACAGGCCGCGTAGAGGAAGGCAGCCAGATCGTTTCTGCCATGCGTGTGATCACCCTGCACGTCCCCAAGCTCTCCATCAAGGTGATCGGGGACCCGCGAGTCAACGAGGAGACGCTTGTCTCCGTGGAGTTCACCAACCCGTTCCAGTTCAGCCTGGATAGCGTGCACCTCCGCATGGACGGGCCGGGGCTGATGACTCCCAAATACAAACATTTCAGCGTGATCCCTCCGAACGGCCCATTGCATTGGCCAGAGTCGTTCACTCCACGGCGGGCCGGGCCCACCAAGCTGATGGTTACCCTGGACTGCCTCGCCCTGAGGCAGGTGTACGACCAGGTGGTGGTCAACGTCAAACCTTAAAGGGGCCGCACGGCACGCCCCCGCCACCTGCCCTCTCCTCCATTCCTGAAGGGGGCTGGGCCAAGGTCACACTCACTAAGAGCAGTGCAACATTTTATATTACCTGTCTTTTACCTCTCTTCTCCTCCAGCCTGTCTTTGCTCTTCTGTTCTTTTATTGCGTAGTTGTGCAAACAGTTTGTGGGTTCTTTCCATTACAGGAGAAGTTATGTATCCGTATATGACCAAAAGAATGAATGGCTTCATGAATTTCACTGAACAGCAGAGCTCTCCAttagaacaatttttaaaaaaaagctttttcaaggggggggggggggttggtggctACCACATCAGACAAGTGGAGCACTGAGCATACAGTATGTCTGTAGCCATGACACATGCGGAACCCCATGATCTAGAACAGTGATCTACACTGCTTTTTATCACTTAGTGTTTTTAACTTGTGTTCAAGGTTATCCCTTCCAGGGCTCTATGTTACTTAGTTCCAACTAACAGCACTGCCCGTATTTACAGTACATCACAATATAAGATCATCATAATACATCATAAGCATTCCAGCCATAGGCAGTTTTAGGTAAGTGGAAGCAGTTAATGTTGATTAGACAGCGTGGTTGTTGGTGATGGAAAATGGCTATATTAACATGGCGGTCATATTAGCCCCGATTTCATATACAAAGGCAGACAAGTTCATTGGCATAGGTTTAATTTAAACTTTGAACCACCTAATCTTGTGTAGACAAACATCAAGTCTCACAAACATACTGGCTAGTCTGGGGACCAAATAATCCATATGAAGATATTGGGGGTGGCATGTCTCCCCACAAGCCTATGTGTATGAAGTCCATGTGTTAGTCAATGCTTATGTTAAAACCATGTTACAATCAAAACCAACAAAAAAGTAAGAGATATGCAATATTTCTATTATTCTTTTCATACATAAATTTAATTTTGTTCAAGCTATTCAATTGTAgttgactgtactgtatatatgcatattatacatcaatgcctttattttcattttataattccttccttccttccctccATTAAATATGCTGTTGAAACCACATTGATGTTGCTACACTTTATTTCAGAATAATAACTAACAATAAAATCACTAATAAGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00868	Transglut_N	Transglutaminase family	Domain	Interproscan
PF00927	Transglut_C	Transglutaminase family, C-terminal ig like domain	Domain	Interproscan
PF01841	Transglut_core	Transglutaminase-like superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001102	Domain	Transglutaminase, N-terminal	Interproscan
IPR002931	Domain	Transglutaminase-like	Interproscan
IPR008958	Domain	Transglutaminase, C-terminal	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR023608	Family	Protein-glutamine gamma-glutamyltransferase, animal	Interproscan
IPR036238	Homologous_superfamily	Transglutaminase, C-terminal domain superfamily	Interproscan
IPR036985	Homologous_superfamily	Transglutaminase-like superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050779	Family	Protein-glutamine gamma-glutamyltransferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11590	PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003810	Molecular Function	protein-glutamine gamma-glutamyltransferase activity	Interproscan
GO:0018149	Biological Process	peptide cross-linking	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0072378	Biological Process	blood coagulation, fibrin clot formation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-