Gene detail

Detailed information of SKAU_T00428420 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00428420	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 2	JAINUF010000034.1	124223	147859	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00428420

gaggaggaggtgggggatGTGGGTGTTTGTTTAAGCTAAGGCGCCGTGGCCACATGACCGCCTTGTTCGTGGTTTATGTGCTAGCTAACGCAAATCTAGCTACGCATCGTGCGCATAACTGGGCTGAGTCCTTGTTGTGGATCTAAAATAGCAActcgggggggaaaaaagcacaATGCCAGAGCCGGCAGAGATGAGCGGTCCAGAGGTTGCGAAGACGCCGGGGGGCAGCAGTGGCCCAGGGAAGGATGGGAAGGAGCCGGTGGCCAATGGGCACGGGGAGAGCGAGGCCAACCCCTTCGCTGAGTACATGTGGATGGAGAACGAGGAGGAGTACAACCGACAGGTGGAGGAGGAGCTGTTGGAGCAGGAGTTCCTGGAACGTTGTTTCCAGGAGATGCTGGACGAGGAGGATCAGGATTGGTTCATTCCAGCAAGGGACCTCCCCTCGGGGGTGGGGCAGATACAGCAGCAGCTCAACGGGCTGTCCGTCAACGACTGCAACACCGAGGACATTGTGCGCAAAAGCAGCTTAAACCCAGAGGCAAAGGAGTTTGTGCCAGGAGTGAAATACTAGGGTCCTCCCCACCAGGGGGCGCCCTTACAGAGACTCTGGTGATTGTCACTATGGCGGTCATACCTGCACTCACTCGGGACAGGGGCGTGTGGGAGACACGGCGAGGGAAAAcaacaatgacaaaaaaaaaacaacaaaaaaaaactcttcgATAAGCTTTTTATTTCCGTTTGTTTCAACGTGTAAACTGGGCGGGGGGGGCGGTGGGTGGTGGGGtggaggaggggcgggggggagagaggggggagggagggaagcgCCCGGGCGCCACGGTGTTCCCTGTCGGACAGGAGAGATATAGCATCATACTCTGTGTAGAgcctttttttctttgtttttttttcctcctctcaATTCAAAGGACCGATCACGTGAGTTCTTGTGGGTAGCAGTTTTTCCCTGATCAGGTTGTATTTTCCCCccgttttagttttagttttggaCACAGTGGTGTCCAGTGCTGGGGAGGGCAGGAATGGGGTTGGTTACCAAACATGACACACACCcagacgcgcgcgcacgcacacacacacacgcatacagacatgcgcctacacacacacacacacacacacaaacacacacgggtCAGACAGTTGACCTTGCTAAATCTATAGGAAAAGCCTGTGGGGGATTTACACAGAATCTTTTTTTTGAAAGTCAGAATACTGACACAAAGTACGAATTTCAttaagaaaaaggaagaaaaaaagacaaataaagatAAAAACGGGTACCTTTTGGACCATCACTTGTGTCCCGTCTCCTGTTGTTCTTTCAGTAAAGCGAAAGGAAGTGCTGATCATATGAGCACTGCCCTTCCTGTTACAACATAACAGTGTTTGATATTAAGAAAAGGCTATAGCCTAGAAGCCTCTATAAGCCTCTCTCTTGCCTGCTCCAGCACAGTGCCAAGCCTGGTCTGTAATACCAGCTTTtcacaaaatgttttattttttttgaaaatatactTTCTGATGTGAGAGAGAAAATATATTGACTAATCTCCACGTATGACCCCCATGTTCTGCTGACCAAAACCACCCTTCGATGTCTCTTGCAATCCCTGTTAAAAATGTACCTCCATCCCAAGTTCTGTTTGTTACACATCGACATTGTGTCTTAAGTCTTTCTTTGTAACTATGTTTGGTGCCAGAACCCAGTTTTGTTTCCCTTCTTTGTACTTTTCAAGAGCTTCTATACCTTTCTTAGGGTAAGATGCTCAGAAATGGATAGTTAATAGATACAATGTTTTCTTACAATGGAACAGCATCTACATTCCTGCATGTCAGGGATATCCAGCTCCAGGAGGGCTGCAGTTTCtgtaggtttttgtggtttcagcagccaatttagggaACGGGGTGTGGACTCTTCAGCCAGCCTGTGATTTAATGGCATACCAAAAACTAGCAGACGCTGGGGACCCCCGGGACTGGAGTCTGACCTCTGGCCTGTGTTCTGCTTGGACTGTAATGTTCATCATTCCTGAAAAAgctttctcctcctctcctccctggcACATTTTTTTAGTGTTTTTCAGAACCAAGAATTTTAGTGTCCAGCACGTTTGTCATCAACCGGACAAATGTTAATTTCCGGTTAATGACAAAAGTGCAAGGCACTAAAAATTAACGGCTGTGATAGAACGTTTGTTACCTGACCTGTCACTTCAGGACATTTGTCTAAACATAGACCTTATCGACTCCGTTGCCTGGTAGCAGAAACCCGCCAAGGATTTTAATTGAAAATGTCCATTAAGGTTTTTACGGCTGtcactccctcctcctcctcccccacgagagagtgagtgaaagagcAGACCAGGCTGCTCCTCAGTCTGTGTAAGGAGAGGAAGGCTTTTACCATGGGAGGGCAGTGAACATACTCTGCTAGTGCATGTTTAATAGGCCCATCACATTCCATTTCAGCATAACTGCTATGCGTGTCCCTTTTGGGTGAGCGAGCAGATTGTTGCCCAGAAGATGGGATGGAACTTCATCTCGGCAAGCAAGCAAAAAACAAAGACGCACCACATGAGGCAGGCTAGTTCAGTTGGCctctttttgttttcttgtgtgtgtgagaaatgAAGTCACTTTGTGGCTACGGTCATGAGGTGTGGACTCGTTTTAACCATTTGGGACTATCCCGCATCATGTGGCGGGCGAGcgaggagctcgctgctggaatctCATATAAACGGGCGCCCTAATCGGCGTCGTGCAAATCAACACATCCAAAGACCAGCATTGCTCATTTGGAACCACGTGGTGTTTGACATCCATAAGTGCTTGGCCAGACTATCGCCGATGCCCGGTGGCTGCTTTTTCTGTGAaacgagtgcagaacacgcccattgggtcatggtcgggaggcctcctgcTTGCAAAATGAGTCCACCCATTGAGTGGTCCACCACACTCTGAGAGAGCTGCGATGTAAGAGGTTACATTAACCCACCCACCACACGGCAAGCACCAATCGCAAGGTCCAAACGGGAAAACCACAATGACGTCACGGAAGACACCCCTGATCCAAGGTCACGGTTGGGAATTAAGCTGCCGATTGCTTGGACGCAGATTCAGCATCTGGATCTCTGATAGCGAGGTAGGATTCTGGACCACATTGCTGTAATCGCAAAAGGCCCCTTCCGTGGTTGGGACCTGCACTGTCATTGGCCGGCGAAGGAGCACTTGTAGAAGACGTGTGCATTGGCAGCGTAGTCCAGGGGGAGTGTGGTCCCCGTACTCTTGGCCCCAAGGCTGGCCCCTCCAAGTGCCGAAGACTGCTGCAGGGTCAGGAGGCTGTACCCCGAGAAGTGACCACCAGCCGCCTGCCCCAGAACGTCCGTGAACCCTTCCATCCAGAACACGGCAAAGGTCTCAATCCATTGCATTGCATCCATTTACCATGTTCTATTATCCTACCTTTGGTCTTGTATTATTAATGgaaaaaggaataaataaaacatttgcg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07145	PAM2	Ataxin-2 C-terminal region	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009818	Domain	Ataxin-2, C-terminal	Interproscan
IPR040396	Family	Polyadenylate-binding protein-interacting protein 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13154	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000900	Molecular Function	mRNA regulatory element binding translation repressor activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0045947	Biological Process	negative regulation of translational initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-