Gene detail

Detailed information of SKAU_T00422340 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00422340	SUSHI DOMAIN-CONTAINING PROTEIN 1	CM056399.1	16639213	16868837	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00422340

atgacgcaagGGGGCTGTACCTTTGATGATGGCCCCGCCCACTGCAACTACCAGCAGGAGCCGTACGATGACTTTGATTGGGCGCACGTCAGCGCAGAGGAGACGGCGTACCTGTCCTCTCAGCTTCCCCAAGGGTCCTACATGCTGGTGGACTCCTCACAGCATGATGCCGGAGAGAAAGCTCGCCTCCTGCTGCCTGTGATGAAGGAGAATGACACACACTGCATCGACTTTAACTACCTGCTGTCATCTGCGGACGGCTCCAGCCCTGGCACTCTCAACGTCCTGGTCAAAGTCAACAAGGGTCCCCTGGCCAACCCCATCTGGAACGTGACCAATCCGACGGGCAGAGACTGGTTACGAGCCGAGCTGGCCGTCAGCACCTTCTGGCCCAATGAGTACCAGGTCATTTTTGAAGCAGAGGTGTCCAACGGGAGGTCTGGTTACATAGCGATTGATGACATCCAGGTCCTGAGCTACCCATGTGATAAATCACCTCACTTCCTGCGACTGGGAGACGTGGAGGTGAACGCCGGGCAGAACGCCACCTTCCAGTGCATTGCTACGAGCCGCGACGCCGTCAACAACCGGCTCTGGCTACAGAGAAGAAatggagaggacattccagtgacTTACACCAAGAACATCAACCACCGGAGATTCGCTGCTTCTTTCAGGCTAAAGGAAGTGAGCAGTCTGGAGCGTGACCTGTACCGCTGCGTCACCCAATCACAGCGCGGCGCGGGCGTGTCAAACTTCGCCCGGCTAATTATCCACGAACCCCCCCGCCCCATCGCGCCTCCTCAGCTGCTGGCCGTGGGCCCCACCTACCTGGAGATCCAGCTCAACGCCAACTCCATATTTGGGGACGGGCCGATTGTGACGAAGGAGGTGGAGTATCGCATGACGTCAGGCAGCTGGACGGAGACGCACGTTGTGAACAGTCCCACCTACAAACTGTGGCACCTGGACCCCGATACTGAGTACGAGATCCGCGTGCTTCTGACCCGGCCGGGGGAGGGGGGGACGGGCCTGCCTGGACCTGCACTGATCACCAGAACCAAGTGTGCCGAGCCCATGCGTACCCCTAAGAGTGTGAAGATTGCAGAGACGCAGGCGCGCTTCATTGCCGTTGACTGGGAGTCTCTGGGCTACAACATCACCCGCTGTCACACCTTCAACGTCACCATCTGTTACCATTACCATGGCGACCGTAACCGCACAAAGTCCGACTGTCTGGACATGGACCCCAAAGCCCCCCGACATGTGGTGGGGAACCTGCCCCCCAACACCAACGTCACCCTCAAAATGATTCTGACCAACCCTGAGGGACGTAAGGAGAGCGGCGAGGTGGTGATTCAAACGGACGAGGACGTTCCTGGCCCTGTGCCCAGCCAGTCCCTGAAAGCCACATCGTTTGAGGACCGGATCTTTCTGCACTGGAAGGAACCACAGGAACCCAACGGAGCCATCACTCAGTATGAGATCAGTTACAGCAGCATCCGCTCGTTCGACCCCTATGTTCCACTGCTCCAGCCGTCACTCACTGTGACCCTGCCCTCAAACTCCTCCCACCACATCTTCCCTCAGCTCCACCCTGGCACCACCTACCAGTTCAGCATCCGCGCCAGTACCGCCAAGGGCCCTGGGCCGGCCACCAACCTCAACGTCACCACCAACATCTCTGCCCCGACGCTGGAGGAGTACGATGGTTTGGAGGCTTTTCTGAACGAGACCGCCACCACCATCACAGTTCTGCTTAAACCCGCCCAGGCCAAGGGGGCTCCAGTCAGCTCGTACCAGATTGTGGTGGAGGAGCTGAACCCCCGTCGGGCACGCAGGGAGGCAGTTTCGGGAGACTGCTACCAGGTCCCCGTCTCATACCACAGCGCCTCCTCTGGTGGCTCGCCATACTACTTTGCCGCCGAACTGCCACCGAGCAACCTGCCGGAGCCCTCACCCTTCACCGTGGGAGACAATAAGACCTACCACGGCTTCTGGAACCCTCCGTTAGCTCCGCGCAAGAACTACAACATCTACTTCCAGGCCGTGAGCAGCGTGGAGAAGGAGACAAAAACTCAGTGTCTGAGACTCGCaacaaaaggagCGACGGAGGAGCCGGAAGTGATCCCTGACCCAGCGAAGCAGACTGACAGGGTGGTGAAGATCGCTGGCATCGGTGCTGGAGCCCTGGtcttcatcctcatcctcctcctcactGTGCTGCTGGTGAAGAAGAGgAGGACCCACTATTCCTACTCCTATTACCTGAAACTTGCTAAGAAACGCAAGGACGCCATTGGGAACGCACGTCAGGAGATGACCCACATGGTGAACTCTTTGGACCGTAGCTGCGCTGACCAGAGCACGGTCCATGCAGAAGACCCGGTCACCTTCATGGACTCACACAACTTCAACAACAGAATGCCCAGCGACCCACTTGTGCCAACCGCTGTGCTAGTGCCAATAACTGACGAGCCACACCCAGCTTTGGCAGAGTCGAGCCGGCTGCTGGATGTGCCGCGGTACCACTGCGAGGGGACGGAGTCGCCCTATCAGACAGGCCAGCTGCACCCTGCCATCCGCGTGGCCGACCTGCTACAGCACATCAACCTGATGAAGACCTCCGACAGCTACGGCTTCAAGGAGGAGTACGAGAGTTTTTTTGAAGGCCAATCAGCTTCCTGGGATGTGGCAAAAAAGGACCAGAACAGAACCAAGAATCGCTACGGCAACATCATCGCATcAACCGCCGACCTCGTGATGTTGTACGATCACTCCAGAGTGATCCTGCAGCCTATGCCAGATGACCCCTCCTCTGACTACATCAATGCCAACTACATCGATGGATATCAGAGGCCAAGTCATTACATTGCTACTCAAGGCCCAGTCCATGAGACCGTTTATGACTTTTGGAGAATGGTGTGGCAGGAGCAGTCCGCCTGTGTCGTCATGGTGACCAACCTGGTGGAAGTTGGGCGGGTGAAGTGTTATAAATACTGGCCAGATGATGCTGAGTTGTATGGGGACTTCAAGGTGACCTTCATGGAGGTGGAACCCCTGGCTGAATATGTGGTCCGAACCTTCACACTGGAGCGGAGGGGTTTTAATGAGCTGCGGGAGGTTAAGCAGTTCCATTTCACCGGCTGGCCAGACCACGGTGTGCCATATCATGCCACCGGCCTCCTGTCCTTCATCCGTCGCGTCAAAATGTCCAACCCGCCAAGTGCTGGGCCCATCGTGGTGCACTGCAGTGCAGGAGCAGGGCGAACAGGATGTTACATTGTCATCGACATCATGCTGGACATGGCGGAGAGAGAGGGCGTGGTCGATATCTACAACTGCGTGAAGGCGCTGCGATCCCGACGAATCAACATGGTGCAGACTGAGGAGCAATACATCTTCATTCACGACGCCATCTTAGAGGCGTGTCTCTGCGGTGAGACGGCCATCCCTGCCTGTGAGTTCAAGGCAGCGTACTACGATATGATCCGCATCGACTCCCAGACCAACTCCTCCCACCTGAAGGACGAGTTCCAGacCCTGACCTCTGTGACCCCACAACCCCAGCCAGAGGACTGCAGCATCGCGCTGTTGCCACGCAACCAGGAGAGGAACCGCTTCATGGACGTGCTCCCGCCCGACCGCTGCCTGCCTTTCCTCATCACCATCGATGGAGAGAGCAGCAACTACATCAACGCCGCCCTGCTGGACAGCTACAGGCAGCCTGCTGCATTCATCGTTACCCAGCATCCTTTGCCCAACACTGTAAAGGACTTCTGGAGGCTGGTGTACGACTACGGCTGCACCTCGCTCGTCATGCTAAACGAGATCGACCTGACTCAGGGCTGTCCTCAGTATTGGCCTGAAGAGGGAATGATCCGGTATGGACCGGTCCAGGTGGAGTGCATGTCCTGTTCCATGGACTGTGACGCCATCAGCCGACTCTTCAGAATATGTAACCTGACCAGGCCACAGGAGGGGTATCTGATGGTGCGGCAGTTCCAGTTCTTGGGCTGGGCGGGGCACAGAGATGTCCCCGCCTCCAAGCGTTCCTTCCTCAAACTCATCTTGCAAGTGGAGAAATGGCAGGAGGAGTGTGAGGAGGGGGAGGGAAGAACCATCATCCACTGCCTGAATGGAGGAGGTCGCTGTGGGATGTTCTGTGCTGTCAGTTTCGTGTGTGATATGATCAAACGGCAGAATGTGGTGGACGTGTTCCATGCAGTTAAGAGCCTGCGCAACAGCAAGCCAAACATGGTggacagcctggaGCAGTACCGTCTGTGCTATGACCTGGCACTGGAATACATCGAGAGCTCATAG

Transcript

SKAU_T00422340

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00629	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000998	Domain	MAM domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051622	Family	Receptor-type Tyrosine-protein Phosphatases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24051	SUSHI DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-