Gene detail

Detailed information of SKAU_T00421780 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00421780	G/T AND G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE	CM056399.1	14310215	14319198	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00421780

TTGCTAGCGGTGCTTTGTTTCTGTACTGTCTGTGGATGTTTTTCCTGTGTACTACtctcattaaaaaaaactcacatttcgGGTGAATTTCTAACAGACTAAACAGAAGAGCATCTGCCAGCATCATACATCAACCTTGCTCCGCTGTCGAGGCCATGCAGATAGCCAACGCAGCTAACATCATGGAGGATCCCGGTGGCAGTGAAGAGGGGACTGAGATGACGGAACACCAAGAGACGCCCGCTGCCCTGGAACCCGCAGCCCCAACGGAAGCTCCGATGAAGAcgaagggaaagagaggaaggctTCCGACCAAGGAGCCCAAGCCCAAAAAGGCCAAAGAGTCCGGCCCCCAGCCCAAGGCTAAACCAGGCCCAAAACCAAAAAAGGCCAAAGAGTCCGGCCCCCAGCCCAAGGCTAAACCAGGCCCAAAACCAAAAAAGGCCAAAGAAGCCAAGGGGGGTGAGCAGAAGATCGATGAAGCGTTCAAGAAGGTCAGGAAGAAGGTGGATCGGTTCAAAGGCATGACGGAGGCTGAGGTCATGACCAAAACCCTGCCGGACATCCTCACTCACAACCTGGACTTTGTCATCATTGGGATCAACCCTGGACTGATGGCTGCCTACATTGGACGGTGGTTTCCTGGCCCGGGAAACCATTTCTGGAAGTGCCTGTTCTTATCGGGGATCACTGAAGTCCAGCTCAATCACATGCACGACCAGTCTCTCCCAGAGAAGTATGGGATAGGCTTCACCAACATGGTGGAGAGGGCCACACCAGGAAGCAAAGATCTCTCAAACAAAGAGCTTCGGGAAGGGGGCAAAATtctggtggagaaactgaagcagTATAAGCCTCTCGTTGCAGTCTTCAACGGTAAATGCATTTATGAAATGTTCAGCAGAGAGATCTTTGGGTTCAAGCCGAAGAAGCTTGAGTTTGGTGTGCAGCCGAGCAAGGTGCCGGACACGGAGACGGTGTGTTACCTGATGCCCTCCTCGAGTGCCCGCTGTGCCCAGTTCCCGCGCGCCCAGGATAAGGTGCACTTCTACATCAAACTGATGGAGCTGAGGGACCAGCTCAAGGGCAAGGCCAAGAACAAGGAAGTGGAGGAGATAAAATACACCTTTGACCTTGGAATGGCCAAAGAGGATGCCAAGAGGATGGCCATCAAAGAGGAGCAGTACGACCCTGGGTACGAGGAGGCCTTTGGCGGGGCCTACTGTGAGGCGGGGCCAGGGGCGGAGCCAGGGCCAGGGGCGGAGCCTGAGCAGAGTAAACGGGATTGCAGCTTCTCTGGGGGAGAGACAGAGGACCCCAGTGCAGGGGCCACACCTGTCGCAGCAGAGGGGAGGCCCCTGGGACGGATGACGCAGTCGTTTGCTGATCAGATCCCGGACATCAGCGGCTGCAGCAGCACACAGCCCCAGCTGGGGGCGGAGACTGCATGAAGGGGGCGGGGCCTTGGAGGACATCCCCCCAGGAAGTGTGCGGACGCTGCGGTTTTAATGCCGTTTCCTGCCCAACGCACTGTGCCACGGTTCCCCACCGCACCAGTGATgggtctgcaccccccccccccccattcagtgTACAGAGCAGGAGCGTACCCCAGAGGATCAGAGTAGTGAATCCAACTAATGCtactttttaaactttttatttatttattacacatAACTATTTAATGGAGCTCTTACATTGTTCACTTGGTTTTCAAATGCACCATTTAGAGGGTCCAGAGAGGAAAGTCCCACCCCCTTTTCCCAGCCAATTACAGTGCAACTGCTGCAATGTGATGTCATAAAGGAGGGTAACTAGGCACAACaaacactgagcatgctcaaagATTCTCGACCAGATTGTACAGATTGATCTGTATTCTCCACATGGAAAGTTATGCCTCTACCATGAAACATTACAGTTTGATGGGTCTTGAATATTCATGATGGGGTATCGCCAATCAAAAGAACACACCTCTTCGTGAATATTTATAAACCTTAGTATGGCGCCAGAAACTCCTGACACCAACAGTAACTTCAGAGAGAAAGTGAATGAAGAGGACAGATGAAATTCAGGAGCTTTAATTCTGGTTACTATAGAGAATCTGTGGTGAGTTTTTACTGCACGTTACACAGGTGCTGAACATTTAGTCATTTATCTTTGGCACAGAGGCCAAAGAAGAGAAAGCTTTTTTCCTCTGGTACTTTGGACACTGGGACTCCTCTCTCTTCACCTGTTACCACTTACCTGTGGCTCTCTAATCTACTCCAAATGTCTTTGTGCAAGAGCGGCTGAACTTCAGTGTGGAATCAGGGTGAAAGGACATTATGTAAATGAGTGAGACTGGAACACAAAGCCACTGTCCTGGTGTGAGAAATGGAAGTGGCTTAACTGGCTGTCCTGATGATTTTGTAGCGTGACACAAAAAGGTTACCGTTGCATTTCTAAAGTAAAACGCTGCCCCCAGGAAAGCTGTTTTACTCCTGCAGTGAGTGTCTGTGAGAATGGAGAATGACCGCTCCCACTGTGTTCGTGGGTATCTCCAGCGTGCCAACAGTCAACAATGTGCGCTCTAAAGACAGGAACATGTACACAGCTTAccgcagctctctctctctcttacagtgGTGCTCtctacagctctctctctctctcttacagtgGTGCTCtcagaaaacattttatgaaactGCAGTTCTTATgtttttgtactgtattttagtTGTTTGGAATGGACGATTTTATCCTGATGCTGTCAACTAACATAGACCCAAAGTAATGAGAGGTGCATCATGGGATGGAACGGACGCTAGATTTGAGCTGATGTCTCATTCGTGCACTCCAAAGCGATGTTTATTAACAACATGCTGACATGTCTGTATCTCCCTGAAGAATGCGGAGAGGTACTGGAATATTGGCTCTGACCGACGGcagcagctgttcctgccacatGGAGGTCTTTGTGTGCTGGGGACGGAGTTGTTTATCTGAAATGTGGTTTGATGCAAGCCTGTATGTGAGGAAACAATAAAAGTCATTGCAGATGTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03167	UDG	Uracil DNA glycosylase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000079	Family	High mobility group protein HMGN	Interproscan
IPR003310	Family	G/T mismatch-specific thymine DNA glycosylasee TDG-like, eukaryotes	Interproscan
IPR005122	Domain	Uracil-DNA glycosylase-like	Interproscan
IPR015637	Family	Uracil DNA glycosylase family 2	Interproscan
IPR036895	Homologous_superfamily	Uracil-DNA glycosylase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12159	G/T AND G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000700	Molecular Function	mismatch base pair DNA N-glycosylase activity	Interproscan
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0004844	Molecular Function	uracil DNA N-glycosylase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006285	Biological Process	base-excision repair, AP site formation	Interproscan
GO:0008263	Molecular Function	pyrimidine-specific mismatch base pair DNA N-glycosylase activity	Interproscan
GO:0031492	Molecular Function	nucleosomal DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-