Gene detail

Detailed information of SKAU_T00420810 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00420810	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	CM056399.1	11612225	11635771	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00420810

ATGGCGGACCGATTCAATAAGGTTCTGCTGCTTGACGGCAGGGGGCATCTCCTTGGTCGCCTCGCTGCCATTGTGGCGAAGCAGGTTCTGCTCGGCCACAAAGTTGTGGTGGTAAGATGCGAGGGGATCAACATCTCCGGAAACTTCTATCGCAACAAATTGAAATACCTGGCTTTCCTTCGCAAGAGAATGAACACCAACCCCTCTCGTGGGCCATACCACTTCAGAGCACCTAGCCGGATCTTCTGGAGGACCGTGAGAGGCATGCTCCCCCATAAGACCAAGAGAGGCCAGGCAGCTTTGGACAGGTTGAAGGTGTTCGATGGAATCCCCCCCTCCTTACGACAAAAGGAAGCGTATGGTCGTCCCGGCTGCGCTGAAAATTGTGCGGCTGAAGCCAACTCGCAAGTTTGCTCTGCTTGGGACGTCTTGCTCAACGAGGTGGGCTGGAAGTACCAGGCCATCACAGCCACCCTCGAGGAGAAGAGGAAAGAGAAGGCCAAGCTGCGCTACAACAAGGAAAAAGGTGGAGCTCAAGCTGACGAAGGTGGCCGAGAAGAATGTGGAGAGCAAAATCGCCAAATACACCTGATAGGTTGCGACGGGAGTTTTTTTGTTAAGGAGCGCGGGAGCATGGCGGCCGAAGTGAATGGCAACTCAGCGCCGGCGAAGGAGGATGAGGAGCCGATGGATATAAGCACGACCCACACGGAGAACTACCAGACGCTCATAGACGCCGGCCTGCCGCACAAAGTCGCAGAGAGCTTGGACAACATCTTCCACACCGGGCTGGTCGCGTACGCAGACCTGGACGAGCGAGCCATCGACGCTTTGAGGGAGTTTAATGAGGAAGGGGCCATGTCTGTGTTACAGCAGTTCAAGGAGAGCGATCTGTCCCATGTGCAGaATAAAAGCGCGTTTCTCTGCGGTGTCATGAAGACgtacagacagagggagaaacaAGGAAGCAAAGTGCAGGAGTCCACAAAAGGCCCAGACGAGTCCAAGATAAAGGCACTCCTGGAGAGGACGGGGTACACTCTCGACGTCACCACAGGACAGAGGAAGTATGGGGGACCCCCACCAGAGGAGCTATATTCAGGGTTGCAGCCTGGAGTTGGAACAGAGGTGTTTGTGGGGAAGATCCCCAGGGACCTGTACGAGGACGAGCTGGTGCCGCTGTTTGAGAAAGCGGGCCCGATCTGGGACCTGCGGCTGATGATGGACCCGCTTTCGGGACAGAACCGCGGATACGCCTTCATCACCTTCTGCAACAAGGACGCCGCGCAGGAAGCTGTCAAGCTCTGTGATAACTATGAAATCCGGTCGGGTAAATACCTGGGCGTATGCATCTCTGTGGCAAACAACCGGCTGTTTGTCGGATCAATCCCAAAGAACAAGACCAGGGACAGCATCCTGGAGGACTTCAGCAAAGTGACCGAGGGCCTCATGGAGGTGATCCTCTACCACCAGCCGGACGACAAGAAGAAGAACCGCGGCTTCTGCTTCCTGGAGTACGAGGACCACAAGTCGGCCGCGCAGGCCCGACGTCGGCTCATGAGTGGCAAGGTGAAGGTGTGGGGAAACCCCGTCACCGTCGAGTGGGCCGACCCCGTGGAGGAGCCCGATCCAGAGGTCATGGCAAAGGTGAAGGTTCTATTCGTGAGGAACCTGGCCACGCCCGTCACAGAGGAGCTGTTGGAAAAAACGTTCTCCCAGTTCGGCAAACTGGAGCGGGTGAAGAAGCTGAAGGACTACGCCTTCGTCCACTTCGAAGACAGAGACGCCGCAGTAAAGGCGATGCAGGAGATGAACGGGAAGGAGCTGGAGGGGGAGGAGATCGAAATCGTCCTCGCCAAACCGCCCGACAAGAAGAGGAAAGAGCGGCAGGCGCAGAGACAGACCACCAGAAACACCGGGTACGATGACTATTACTACTACCCTCCCCCGCGAATGCCGCCGCCGCCGGTGCGAGGAAGAGGCCGCGGGGGCAGGGGTGGCGGCTACGCCTACCCCCCCGACTACTACGGCTACGAGGACTACTACGACGACTATTACGGCTACGACTACCACGACTACCGGGGCGGCTACGAGGACCCGTACTACGGCTACGACGACGGCGGCTACACCTCCAGGGGCCGGGGCAGCCGGGTGAGCAGGGGGGCCCCTCTGCCCCCGAGGGGCCGGGGGGCTCCTCCGCCCAGGGGACGCGGTGGCGGAGGGTACGGCCAGCGGGGGGCTCCCATGGGAGCCCCGCGGGGCGGTCGCGGGGGCCGGGGCGGGCCGTCCCAGCAGCAGAGGGGCCGCGGCTCGCGGGGCCCCAGGGGGAACCGAGGGGGGAACGTGGGCGGGAAGAGGAAGGCCGATGGCTACAACCAGCCGGATTCCAAACGCCGGCAGACCAACAACCAGCAGAACTGGGGCTCCCAACCCATCGCCCAGCAACCCCTTCAGCAAGGTGGCGACTATTCCGGTGAAGACGCCGTGCCACGCCCCTTGACTGCCTGGAGGAACACATCTATCACGGCTGTGTTCTTCCCGAAAAAAAAAGGgaGGCAAGAAGTGACTCTTAATTGCAGTAACAAGATTGTTTCTGTTTTTTACCCACAGCAAGAGAACATATCCTTAAATATCTACCAAATCCCCCAGGCCAGGCTGTTAAAAACAGAATATTTTCATCTCATCATGGAGGTTTAA

Transcript

SKAU_T00420810

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00572	Ribosomal_L13	Ribosomal protein L13	Family	Interproscan
PF18360	hnRNP_Q_AcD	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR005755	Family	Large ribosomal subunit protein uL13, eukaryotic/archaeal	Interproscan
IPR005822	Family	Large ribosomal subunit protein uL13	Interproscan
IPR006535	Family	HnRNP R/Q splicing factor	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR023563	Conserved_site	Large ribosomal subunit protein uL13, conserved site	Interproscan
IPR034410	Domain	Heterogeneous nuclear ribonucleoprotein R, RNA recognition motif 1	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036899	Homologous_superfamily	Large ribosomal subunit protein uL13 superfamily	Interproscan
IPR041337	Domain	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015934	Cellular Component	large ribosomal subunit	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-