Gene detail

Detailed information of SKAU_T00409320 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00409320	ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32	CM056396.1	29034115	29045233	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00409320

TGCGAAGTATCATGGAGGATCAGTTAGCGAAGAGTAGCCATTGAAGAAAGCCGAGCTGTTATTCTGAGCTCCGgagtttctgtatttttttaaacatacatttGTCTTCTTTTGGACGAAATTGTCgtatatttatttttagaaatggaGATGAAGAAGAGAATAAGTTTAGAACTACGGAACAGGACTCCAGAAGAGGTGGCAGAGCTGGTGGTGGATAACTGTCGGTCTAGCGACGGTGAGGTGGAGGGGCTGACCGATGACTTTAAAGAGCTGGAGTTCCTCAGCATGGTCAACGTTGGCCTGACCTCTGTGGCCAAACTGCCCTCTCTGCCCAAACTGCGCAAGCTGGAGCTGAGTGACAACAGCATCTCCGCTGCCATGGAAACCCTGTCGGAGAAATGTCCCAACCTGACCTACCTTAACCTGAGCGGCAACAAGATCAAAGAGCTGCGGACTGTGGAAGCCTTGCAAAATTTGAAGAACCTGAGGAGTCTGGATCTGTTTAACTGTGAGATCACCACCCTGGAGGACTACAGAGAGAGCGTCTTTCAGCTGCTGCCCCAGGTGACTTACCTGGACGGCTTCGACCAGGAGGACAACGAGGCCCCCGACTCGGAGGCTGATGACGACGatgatgacgatgatggcgAGGAAGGGGCCGGCCCCACGGGGGATTACGATGACGAGGATGATGATGAGGAAGGATCAGATACGGGCGAGGTGGGACTGTCCTACCTAATGAAAGAAGGCATCCAGGATGAAGAGGATGACGATGACTACGtcgatgaggaagaggaggaagtaGAGGAAGAGAAGGCGGCAGCAGGTGTCCAAGGGGAGAAGCGCAAGAGAGATCAGGACGACGAGGGAgaggaagatgatgatgatgatgatgatgatgactaaACCCCCAATTCCCCCACCacaccccccccgccctccccccatCTTCTGGTCCCCCCTGGAACCCTGGATCCAGAACCAAGCTGTAGACCATCCACAGAAAGTGTGATCTTGCAGATTTCAAttttataattctttttttttttttttcccctctctctctttgtaaAACATAGATATCACTGTAgaaatttaaatgtttaaattttttttttttttaatttacatatgctatttgaataaaaaaaggaaaggttTTAAGCAACATAATCATTCCAAGATTTATTCACCCCCCCTTTTTCTGATAATATTTGGGTTTGTTTGAGGGGCGGGTTCGAGTTGAGGCCATTCATGGCCATCCATTCATAAAACCGACATGCCAATAGCCAGTTGCTTACTTGGCTTTAGTTTTCGATCAGTAACaagccaaatgttttttttcttttggcattTCATTGGTTTTTTAAATCGCTGGCAGCAAGAGTCATTTTTGTGGTCTCCTTTTTACTTTGTGTTTTTAACTACTTGTTCGACCCAGTTTCTCACTTCGCTcggggtaacccccccccccccccattctgttGTCCCGGCAGGCTTGATTACAACCCTGGGATTcttcccaccccccacctcccctttTTCCAGCTGTCTGGTGAAACTTCCCATTTTACCCAgagtctccttctctctctcccccctcccctcaatcCAAGCAGCACCTGTCTTTTCCACCACAAATCTCGGGATTTGCGGGGTCTTCAAGAGAATGGCCAGAGGTCTTGGGGGCACCGCCCTCCCCCTAGAAATGTACACGCCCCAAAAGCTGGCCGTGCTCGTGCTCCTGGTTGTACCGCGCCGTGCGTtttgttattgtttgtttgtttgtctgtttttgtAGACTCCCCCCGTTCCTTCCCAGTTAAATCTTCTTATGTCTTCTGTTTATGGTTTTGTATCGAATAGATTAAGTCTTGTTCCTTGTCTCTCATAGGCTAGTCACAGCAGCTGTGGTAGACCAATCGTGGAAATAATTCAAGAGTTGTGTTGACAACAGTTGGCTGGGGAAGGGTGTTTGAGAATCGTGTTGTAGGGATCTACTGGAAGccagacttttaaaaaaattaaaaaaaaacaataaaatgaaaaatataacgGTTTTCTGGTTTTAAAGGGGGAGAAATCATAATTTTATATTTGTCCTTACCTTAAGTATAATGTTTCCGTCTCATTTATGCGTCACATAATACTTTATCCCACAATAAAGGAAATGTACGGAGCCCCACCCCCAAACAGTGATGTCATCCAGATTTAACTCCTCTCCCTCTGTAGAGAATGGATTTGGGTCATTTAGAGTGCAGTTCTGATGAATCTAAGACGAGACTCCAAAGCTTTTAGGAGTTTCTTAAATTGAATTTATTAATTCTGGGATTCAGGAGGATAGATTTTTCTCAGTGTTATCCAAGGAGGAGGAGTTTTAGTCCAGTGATATTTGCGTATACAGACGAAAGATTTGTTTCAGACACAAGGGTACAGACCAACATTTGAAgttatgatttgttttttttgagtAGAGTTACCTTTTTAAAGGCATCTTTAAGAGTCGTGAAGGGCTAAGGAATTAAAACCGTTTGAATCATGGCGTTCCGAGATGCAGCCACAGAGGACATCATGCCGTTGGCATTCAGGACCCGCAGCCCGGCCCAAAAAATGAAACTTCGAGGGCAGTTCAGTCCTGCCCCAAAAACTATTGGGCCTTCACATTCAATTGCAAATTTCACAACCCCGCCACCCCATTGTTTCTTTCAAAACATTTTCGTTTCAGTTTGCggtcattaaaaataataaaagcgtAACTCAAACTTTAAATTTGTCATCGAGTGTCGAGGTCAAACTAAACTTGTCAAGGAGTGAACTATTTGTTATCCCTTTTACCTCTTGATCTTTTGTCTGGCATTGGACACAAATTAGTGTTTGGGGTTTGTTTTTTGTTCGAGTGAGAACTTTATTGTTGTATGGCAATATGTATATAGTGTTCGTTCCAACTGTCTTTGTGTCTCctgtgtaaatgtttttttaaaaaagaaaaaaaactggtttTAATACAAAGCACAGGTAGGAAAGTCAGGCTTTAGACCGCAACACTCGATATATAGTTTTGTTTTCGGTTCTTGGCTGTTGTGACAGTTATGTGTTTGGCATTTGTGTGCTGTAAACCTAAGAGgggttttaaataaaaataaataagtttaaaaaaaaaaaaaaaaaacctgctttaaaaataaaaattcaaaaaa

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14580	LRR_9	Leucine-rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR003603	Domain	U2A'/phosphoprotein 32 family A, C-terminal	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR045081	Family	Acidic leucine-rich nuclear phosphoprotein 32	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11375	ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0019212	Molecular Function	phosphatase inhibitor activity	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-