Gene detail

Detailed information of SKAU_T00403460 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00403460	IMPORTIN ALPHA	CM056396.1	18632623	18661870	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00403460

ATGAGGAGGCGGGAGTTCTTGACAGCCCCCCTCATGGATGCCTTCATTAGCTCCACTACAGCTGGGGAGGGCGTCATCTCCAGAGACATGGTGGAAATGCTCTTCTCCGAAGATCCTGAACTGCAGCTTGCCACAACACAGAAATTCAGGAAGCTTCTGTCAAAGGAACCGAATCCACCCATCGATGAGGTCATCAACACCCATGGGGTCGTGGAGAGGTTTGTGAAGTTCCTGAAGAAAAGCATCAACTGCACACTGCAGTTTGAGGCTGCCTGGGCATTGACCAACATCGCCTCCGGGACGTCTCAGCAGACCAAGATTGTGATCGAAGCCGGGGCGGTGCCCATCTTCATTGAGCTCCTCAACTCTGACTTTGAGGATGTGCAAGAACAGGCTGTGTGGGCTCTTGGGAACATCGCAGGTGACAGTGCTGTGTGCAGAGACTATGTACTAAGCTGTAACATCCTGCCACCTCTGTTAATGTTGTTGACCAAGTCCACCAGACTGACGATGACCAGGAATGCGGTGTGGGCACTATCAAACCTATGCCGAGGAAAGAGTCCACCACCAGAGTTTGAGAAGGTTTCTCCATGCCTGCCCGTCCTGTCCCGGCTGCTGTTCAGTAGCGATCCGGATCTGCTGGCGGACGCGTGCTGGGCCCTGTCCTACCTCTCAGACGGGCCCAACGAGAAGATCCAGGCCGTCATCGACTCGGGGGTCTGCAGGAGGCTGGTGGAGCTGTTAATGCACACGGACTACAAGGTGGCCTCACCAGCTCTGAGGGCTGTGGGGAACATCGTCACCGGTGATGACATTCAGACGCAGGTGGTCCTGAACTGCTCCGCCCTGCCCTGTCTCCTCCACCTCCTGAGTAGCGCCAAGGAGTCCATCCGCAAGGAGGCGTGCTGGACCATCTCCAACATCACGGCGGGTAACAGAGCACAGATCCAGACGGTAATAGACGCAAACATCTTCCCCGTCCTGATCGAGATTCTCCAGAAGGCAGAGTTCCGCACAAGGAAAGAGGCGGCGTGGGCGATCACAAATGCGACCTCAGGCGGGACCCCTGAGCAGATCAGGTACCTGGTGAACCTGGGCTGCATCAAACCGCTGTGTGACCTGCTGACCGTCATGGACTCCAAGATCGTCCAGGTGGCTCTGAACGGCCTAGAGAACATCCTGAGACTGGGGGAGCAGGAGGCCAAAAAGGACGCCAAGCAAAATGGCAGCGGCATCAATCCCTACTGCGGCCTGATCGAAGAGGCATAtgGACTGGATAAGATTGAATTCTTGCAGAGTCATGAGAACCAGGAGATCTACCAGAAAGCGTTCGACCTGATAGAGCACTACttcggtgaggaggaggaggatgccaGCCTGGCCCCGCAGTCACACCATCGAAACCCCACGGCGCGCAGCCGGGCTGAGCGGACAGCCGCTACCATTCCGAGCCGAACACCGACCGCCGAAGGCCCGAGCCTGCGACAACGACGACGAGCAGCGACACACCACCACCGCTGCTTTTGTCGCCCACGGTATATTCCCCGCTTAAACATGAAGAAGCAGAATAGTGAGGGCCAGGAGCAGGAGTGCGGTGGAGAGGTACAGCCCAGTTCAGAGGAGGCGACTGGAGGAAGCGCCGTGGCTCCGGAGACCCCCGGCAGTCCAGAAGGAGCAGATGAACAGCAGTCCGTCACCCCTCCGGTGGAAGGTCAGGCAAAGAACGGCGAGGTGGAGGTGCTGGTGCCGCCGGCGCCGCCGTCTTCCTGCGACATGGCGGAGGAGCTGAGCCGGCAGCTGGAGGACATCCTCAGCACTTACTGCCAGGAGGACAGCGGCGAGGACGCGGCCCCGCCCGAGGGCTGCAACGGTCGGCCCGACGGCCTGGAGGTCAACGGCGTGGCCGAGAAGGTGGACGGAAAGCGCGAGGGGCCCAAACTGAACGGGAGCATCGCCGAAAAGGACCAGAAGAAAATGCAGGAGAAGAAGAAACTCAAGGGGTTAGGAAAGGAGATCACCCTCTTGATGCAGACCCTCAATACTCTGAGCACGCCGGAGGAGAAACTCGGAGGCCTCTGCAAGAAGTATGCTGAACTGCTGGAGGAGCACCGTAACTCCCAGAAGCAGATGCGGTCCCTGCAGAAGAAGCAGACGCAGCTGATCCAGGAGAAGGACCACTTGAGGAACGAGCACAGCAAGGCCATCCTGGCTCGCAGCAAGCTGGAGAGCCTGTGCCGAGAGCTGCAGAGACACAACCGCACGCTCAAGGAGGACGGGATGCAGCGCGCTCGGGTGGAGGAGGAGAAGCGTAAGGAGGTGACCTCACACTTCCAGGTCACGCTCAACGACATCCAGGCGCAGATGGAGCAGCACAACGAGCGCAACGCCAGCCTGCGGCAGGAGAACATGGAGCTGGCCGACAAGCTCAAGAAGCTCATCGAGCAGTACGAGCTGCGAGAGGAGcacaTAGATAAAGTGTTCAAGCACAAGGACCTACAGCAGCAGCTGGTGGATGCCAAGCTGCACCAAGCCCAGGAGCTGCTGAAGGAGTCTGAAGACCGCCACCAGAGGGAGAAAGACTTTCTCCTGAAAGAGGCAGTGGAGTCCCAGCGGATGTGTGAGCTCATGAAGCAGCAGGAAGTCCACCTCAAGCAGCAGTTGTCATTGTATACGGAAAAGTTTGAAGAGTTCCAGAACACACTTTCCAAAAGCAACGAGGTGTTCACCACGTTCAAGCAGGAGATGGAGAAGATGACCAAGAAGATTAAGAAGCTGGAGAAAGAGACCACGATGTACCGGTCAAGGTGGGAGAGCAGCAACAAGGCTCTTCTGGAGATGGCAGAGGAGAAAACACTGCGGGACGGCGAGCTGGAGGGCCTGCAGGGGAAGGTTCTGAGGCTGGAGAAGCTGTGCCGCGCCCTGCAGACGGAGCGCAACGAGCTGAGCAAGAAGGTGCAGGGCATGAGCAGCCCGGGGCCGGGGCCCGCACAGGCCACAGACTCTGACCTCAGCAGCCCCGACCCAGAGACTCCGCCCGCCCGTGCCGCGTACCCCCCGGCGTGCCACTGCGGCCCGGAGGCAGCGGGCGAGGCCCTGCAGGCCCAGGAATGA

Transcript

SKAU_T00403460

CGCGAGTCCCGCGAAGGATAACTACCGAATGAACCGCTACAAGAACAAGGCCCTGAACCTGGAGGAGATGCGCCGCCGGCGGGAGGAGGAGGGCGTCCAGCTCAGGAAACAGAAACGAGAAGAGCAGGTACTCAAGAGGAGAAATGTGGAGATGCTGAATGAGGAGGCGGGAGTTCTTGACAGCCCCCCTCATGGATGCCTTCATTAGCTCCACTACAGCTGGGGAGGGCGTCATCTCCAGAGACATGGTGGAAATGCTCTTCTCCGAAGATCCTGAACTGCAGCTTGCCACAACACAGAAATTCAGGAAGCTTCTGTCAAAGGAACCGAATCCACCCATCGATGAGGTCATCAACACCCATGGGGTCGTGGAGAGGTTTGTGAAGTTCCTGAAGAAAAGCATCAACTGCACACTGCAGTTTGAGGCTGCCTGGGCATTGACCAACATCGCCTCCGGGACGTCTCAGCAGACCAAGATTGTGATCGAAGCCGGGGCGGTGCCCATCTTCATTGAGCTCCTCAACTCTGACTTTGAGGATGTGCAAGAACAGGCTGTGTGGGCTCTTGGGAACATCGCAGGTGACAGTGCTGTGTGCAGAGACTATGTACTAAGCTGTAACATCCTGCCACCTCTGTTAATGTTGTTGACCAAGTCCACCAGACTGACGATGACCAGGAATGCGGTGTGGGCACTATCAAACCTATGCCGAGGAAAGAGTCCACCACCAGAGTTTGAGAAGGTTTCTCCATGCCTGCCCGTCCTGTCCCGGCTGCTGTTCAGTAGCGATCCGGATCTGCTGGCGGACGCGTGCTGGGCCCTGTCCTACCTCTCAGACGGGCCCAACGAGAAGATCCAGGCCGTCATCGACTCGGGGGTCTGCAGGAGGCTGGTGGAGCTGTTAATGCACACGGACTACAAGGTGGCCTCACCAGCTCTGAGGGCTGTGGGGAACATCGTCACCGGTGATGACATTCAGACGCAGGTGGTCCTGAACTGCTCCGCCCTGCCCTGTCTCCTCCACCTCCTGAGTAGCGCCAAGGAGTCCATCCGCAAGGAGGCGTGCTGGACCATCTCCAACATCACGGCGGGTAACAGAGCACAGATCCAGACGGTAATAGACGCAAACATCTTCCCCGTCCTGATCGAGATTCTCCAGAAGGCAGAGTTCCGCACAAGGAAAGAGGCGGCGTGGGCGATCACAAATGCGACCTCAGGCGGGACCCCTGAGCAGATCAGGTACCTGGTGAACCTGGGCTGCATCAAACCGCTGTGTGACCTGCTGACCGTCATGGACTCCAAGATCGTCCAGGTGGCTCTGAACGGCCTAGAGAACATCCTGAGACTGGGGGAGCAGGAGGCCAAAAAGGACGCCAAGCAAAATGGCAGCGGCATCAATCCCTACTGCGGCCTGATCGAAGAGGCATAtgGACTGGATAAGATTGAATTCTTGCAGAGTCATGAGAACCAGGAGATCTACCAGAAAGCGTTCGACCTGATAGAGCACTACttcggtgaggaggaggaggatgccaGCCTGGCCCCGCAGTCACACCATCGAAACCCCACGGCGCGCAGCCGGGCTGAGCGGACAGCCGCTACCATTCCGAGCCGAACACCGACCGCCGAAGGCCCGAGCCTGCGACAACGACGACGAGCAGCGACACACCACCACCGCTGCTTTTGTCGCCCACGGTATATTCCCCGCTTAAACATGAAGAAGCAGAATAGTGAGGGCCAGGAGCAGGAGTGCGGTGGAGAGGTACAGCCCAGTTCAGAGGAGGCGACTGGAGGAAGCGCCGTGGCTCCGGAGACCCCCGGCAGTCCAGAAGGAGCAGATGAACAGCAGTCCGTCACCCCTCCGGTGGAAGGTCAGGCAAAGAACGGCGAGGTGGAGGTGCTGGTGCCGCCGGCGCCGCCGTCTTCCTGCGACATGGCGGAGGAGCTGAGCCGGCAGCTGGAGGACATCCTCAGCACTTACTGCCAGGAGGACAGCGGCGAGGACGCGGCCCCGCCCGAGGGCTGCAACGGTCGGCCCGACGGCCTGGAGGTCAACGGCGTGGCCGAGAAGGTGGACGGAAAGCGCGAGGGGCCCAAACTGAACGGGAGCATCGCCGAAAAGGACCAGAAGAAAATGCAGGAGAAGAAGAAACTCAAGGGGTTAGGAAAGGAGATCACCCTCTTGATGCAGACCCTCAATACTCTGAGCACGCCGGAGGAGAAACTCGGAGGCCTCTGCAAGAAGTATGCTGAACTGCTGGAGGAGCACCGTAACTCCCAGAAGCAGATGCGGTCCCTGCAGAAGAAGCAGACGCAGCTGATCCAGGAGAAGGACCACTTGAGGAACGAGCACAGCAAGGCCATCCTGGCTCGCAGCAAGCTGGAGAGCCTGTGCCGAGAGCTGCAGAGACACAACCGCACGCTCAAGGAGGACGGGATGCAGCGCGCTCGGGTGGAGGAGGAGAAGCGTAAGGAGGTGACCTCACACTTCCAGGTCACGCTCAACGACATCCAGGCGCAGATGGAGCAGCACAACGAGCGCAACGCCAGCCTGCGGCAGGAGAACATGGAGCTGGCCGACAAGCTCAAGAAGCTCATCGAGCAGTACGAGCTGCGAGAGGAGcacaTAGATAAAGTGTTCAAGCACAAGGACCTACAGCAGCAGCTGGTGGATGCCAAGCTGCACCAAGCCCAGGAGCTGCTGAAGGAGTCTGAAGACCGCCACCAGAGGGAGAAAGACTTTCTCCTGAAAGAGGCAGTGGAGTCCCAGCGGATGTGTGAGCTCATGAAGCAGCAGGAAGTCCACCTCAAGCAGCAGTTGTCATTGTATACGGAAAAGTTTGAAGAGTTCCAGAACACACTTTCCAAAAGCAACGAGGTGTTCACCACGTTCAAGCAGGAGATGGAGAAGATGACCAAGAAGATTAAGAAGCTGGAGAAAGAGACCACGATGTACCGGTCAAGGTGGGAGAGCAGCAACAAGGCTCTTCTGGAGATGGCAGAGGAGAAAACACTGCGGGACGGCGAGCTGGAGGGCCTGCAGGGGAAGGTTCTGAGGCTGGAGAAGCTGTGCCGCGCCCTGCAGACGGAGCGCAACGAGCTGAGCAAGAAGGTGCAGGGCATGAGCAGCCCGGGGCCGGGGCCCGCACAGGCCACAGACTCTGACCTCAGCAGCCCCGACCCAGAGACTCCGCCCGCCCGTGCCGCGTACCCCCCGGCGTGCCACTGCGGCCCGGAGGCAGCGGGCGAGGCCCTGCAGGCCCAGGAATGAGCCGCCTGTCTGGGGAACCCCCGTCTCCCTCTTTCCCCCCCTCTTTTCCCCTTTCCCAGTCTTCTGCTGCAGCAACATTTTACCACCTTTTGTTTTCGTAGGGAGCGCATTTTGGCGGGAAGCACGTTTTCCCTCAAGATCGCACctccgttgttttttttttttttgcccctcccaTTTCCTTTCCGTAAAGCACACATTCATGAACATTCCCCGCTTTTACGTGCCGGGCCACGCGAGGGAGCAAGCCGCCGTTTATGCGAACGCGGTCAcaaaagcgctttgagtgtgtcggtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgcacgcgcTGTTCTTGTATGGATTTGCCTTGGCTGACCACCCCTTGAActgagctgctgctgctgctgcacttGGATGGCCAGTTTTGGAGCGCTAGCACTGCACGTTACAGCGGCAAAAGCATGGCTAGTACCTCTGTCAGGGCGTTTTTAATTTGCTGCCTTAAAAACTTGTGTGTGGAAAGCTGCTGTGCGACGGTCTGGCTTCACAATGTGCGGGGTGAGCTGTCTGCGtagtgttaaaaaaaacaaacaaaaaaacgccTGCTTCGTAGCCAGCTTTGACTAATGTCCAAAGTCTCAAAACGCAAAATTTGCTTCAGCTACGATTTGGGGGGGACAAAGTAATTGAGCAAAGACTGTAGTTAATTCACGTAATCATTAAAAACATGTAAACATGGGGCTGCAAGAGCAACACAATTATGAGTTTCTCTTAAAGCTCCAAACTTTTCATTCACAATATTTTTTGTTAATCTTTCTTTGCACCTTTTATATGTTGCAGAGTTCACCTACATTTGTAGTTTATATTTATCTTTTCTATGACACAGTGAGTTATTAGAAGTCTGTATCTGCAACAAGAACACAACTATCTTTTTGGGTATTTATACGTTTGAGATTTTCTTAATCATTATATAAAATGTTGATTATTAACTTTTAAAGCTAATAGCATAATTTTCTTGGACCAATTTTTCAGTTATAGTCACTCTATCATTCCTATAActacaaaaatacataaaaatccAATACAAACAGGAATAAATGAAGGTATTTTCTACAAATGCATTATTTTCTTTTTGGTGTTTATGCTcaagacagaaaataaaaatgaaaaaaaataaaaacatacagaGAAGCTACAGTTTGACCTTGCATCAGAATTTCCTAGATCCAAACAAGttgaatattatttttatttatttttgtaagatCTGAGGAGATTCATTTAAGCATGGATTTGCAAgggaacctttttttttattttttattttattataaaagtACCCTGAAGTATAGCAGTCTTCTAATTTGTTTTCCAGTGCCGGACGACAAATGAAAGTCAAGCCAGGTCTCTTTTCTATGCAATTCCAGCCTCTCAAATGTGTATGTCGATGTTTTTTTAATTGTGAAGTACTTTACAAGGTACTGGTTTCCATAATTCACCAGAAAAAGAATGTATCTCACTTAAAATGGCATACTCATTTGCACCTCATTTGCCTAGTTTTTCATCAGTGGCCACATATTTTCAGAATAAATCttcaaatgttgtttattttggtCAGTTGACTGCCCAAGGAGGATCATTTCTCCCAAGTCGCTACTACAATGACTACAATGCTGTGGTTGTGATATGGATTTCAAACTGATGCATTTTTCTCAGCGAAGACAACAATCTAACACCCCTGATGTGTATCCTGTTGACAAAATGGATATAATGAGGCTTGAAAGAAAAATTAATTTGATGCGTTTGATAGAATTACTACCCTGTCATTTCTGGGCAGTCTATCACTATGATTTAAATGGTGCATTTATCCACATCAGATGCCGGATGCGTCCGGTCGTTTAACACTAAAGTCAAATTATTAAGGCCTGTGACCTGTGTCTTCCACAATTTGGcttatgaaaatatttttttgcatagCCTTTTAGTGTAGGCTTTGAAATAGTAACTTAATTTCTAAGCAATTCCAGGTGATTTTATTCATAATCTGTATTATCAATAAAACACGCTTTATCTGGTCCAGTTGTCTCACTATCTATCCttgttatatttgtttcataCTTACACCTCCTGCTCATTTAGGGATAACACGATATCAATCAGGTACCAAAGATCGCATTGCTATGTTTTAAGGCGTGTGCTGTAACGTTACTTCCACTTCCGTTGTTTTGTGTCTACATCTTTAGAATTAAAACATGAATGAAAAAACTATTTGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF09728	Taxilin	Myosin-like coiled-coil protein	Coiled-coil	Interproscan
PF16186	Arm_3	Atypical Arm repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225	Repeat	Armadillo	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR026183	Family	Taxilin family	Interproscan
IPR032413	Repeat	Atypical Arm repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23316	IMPORTIN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0006607	Biological Process	NLS-bearing protein import into nucleus	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0061608	Molecular Function	nuclear import signal receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-