Gene detail

Detailed information of SKAU_T00400200 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00400200	IONOTROPIC GLUTAMATE RECEPTOR	CM056396.1	9996509	10004613	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00400200

ATGCACCAGTACATGATCAAGTACAACCAAAAAGGGGTGGAGGAGGCTATCGCTAACCTCAAGACCGGTAAATTGGACGCCTTCATCTATGATGCTGCGGTAGTAAATTACATGGCCAGGAAGGATGAAGGGTGTAAAGTGATGACCATTGGCTCTGGAAAGGTGTTTGCCACCACGGGCTACGGCATCGCCCTGCACAAGGACTCACGCTGGAAGAGACCGGTGGACCTCGCCCTGCTCCAGCTAGTGGGAGATGATGAGGTCGACATGCTGGAGCGCCTCTGGCTGTCGGGAATCTGCCACAACGACAAGATTGAGGTGATGAGCTCCAAGCTGGACATCGACAACATGGCGGGGGTGTTCTACATGCTGCTGGTAGCCATGGGCCTGAGCCTGCTGGTCTTCGCCTGGGAGCACCTGGTCTACTGGAGACTCAGGCACTGCCTTGGCCAGTCGGGCAGGCTGGACTTCCTCCTGGCTCTCAGCAGGGGCATGTATAGCTGCTGCAGCATTGAAGACGAAACGGTGACAGAGGGGAACAAAATCACCCTTCCCACCTACCCCCACTCTTCTATGGTGTCCTCGCCTCCCCATGTGATCGCAGCCGCTGTCACCATCCCTGCACTCGCCCTGGTACAACATCAacatccacagcagcagcagcaacagcaacagcatcaacaacaacagcaacagtcACAGCAACAGAAAACATACCGCACCCCGTTGCCAGGGACGCCCCCGACGGCTGCTCATTCAGGGATGGCCCTCGGGCCGTCTAACAGCCCCATGTTGGCCACTCCTCTTCCCTGCTCCACCTTCCTCTCCCGCCCCGATCGGAGGCTGGCCGTGGTCGACCGCTGGAGGCTCCCGAAACCCGCTGCCTCCAAGTCCATCGACGTGGAGGGTGGGGCCCCCGACATGGCGCTATTTCAGCAGAGGGTGACCCCGGGCTGGGTGGGCGGAGATGttaggggtggtggtggtggagcgAGTATGGATGAATACAAGCGTTACTACGGTCCCATTGATCCGGAGGGCCTGGGGGCTTTTATAGACCCACAGATGAGTGGTTCCCAAACACCTAAAACTGGCCAGAGGGCCCAGCCTCAGCCCCCTCCAGCTGGCATGGCTTTCTACCAGGAGAAGAGCACTGACCTTGGGAGCTCCAGGGACAGAGCGGACAggatggagggagaggaggacgaaGACATGGAAGAGCTGACGGAAGAGTCTAGCCTGTTGTTGGGCCGGGACCGGGAGAGGTCGCTTTTTCCCCATCACTCGCACGGCCATGTGCCACCGCCCATACCTCCCCGCAAGCCCCGCCCACAGAAGGGTGGGAGAGAgcacaggagagagagggggcggagcCAGCTGGCCCAGCTGCAGGAGTGGTGGGCtgagtggggggagagagagagagcggggggcagtgctgggggagagagaggggagagaaggagcgaAAAAAGGCGtcagaaggagagagaaaaggagaaaaagaagaagagccggaagaggaagaagagagaggagagggagagggagagggagagaaagcggCGCAAGGCTAAAAAGAAGAGGAAATCCATAAAGGTGAAGGTGAGGAAGCCCAGAGATGTTGAGGTGGAGAAAGAAGCTGAGGGGGATGGGGGTAGGGATCTTGTGATCTTACAAGACTACACCTCCTACTCTGGACAGTACGATGACACTTTTGGGGAAAAGAGGGCGAGGGGGAACAGGGACTCTGCGTGGGATGGTAGtagggatggagggaggagagtggGAGAAGTTGGAGGGGGTGTAAGAGAGGAAAAGCAAAGTGGAGCTCACCACAACAAGGATAGGCATTCCAAAAGTCCTCCAAGCCAGTCCAAAAATCGACCGTTTAGCAAAAGGTATCCCAGCTCAAACAAGCTTCCGGCTTCTGCCAAATTTTGGGGAGGGAGAAGCAGAGGAGGGAACCCAAGCTCTGGTGCCATCACGTCCTCCTGCTCAAAGCACTGGAGGGACAGAGCCGGGGGAAGggaaggaggagaggggaggagaggggagaagcGACCCTTATTGTTGCACCACGAGAGAGGCCTAACCCAGTCCAGAGAGGGCCTGTCTTTCCACGAGTCAGGCTCAGAGAATGACGGTGGAGATGATGAGGAGATAGAGGtagggaatgagagagggagaagggatgAAGGGAGACGGAGAAGCACGGGCCGAGGGGCTGTTTCGGAGTCGGAGAGGGACAGGGGTAGAGTGATAGAGAGTTACTCGGACGATGGGTCGTCAGGGGAATTTGGTAGGTTTGAAAGGTACTGGGAAGGCAGAGACAGCGGGGGCATTGGGGGAGGGGGCTGGTTTTTTGGCACCTATCCCACCAGGGAGAAGGGGAGCAGTGTTAACAGTAGGGACGAATCTGTTTTAGGGCGCGGGGAAGGGTGGGGATCGGGTGGAGGCGGGTGGGGTTTGGATGGTGCGACAGGATGGGGGTCAGGTGGCCTGGGGGGCACCCAGCATTGGCCTTCTCCACCCACGGTCCCCAGAAGGTATTGGTCAGTGGACAAGCTCCACATAGATGATGAAAAATGGAAaggtggagggaagggaaaacagaGGGCGGGGGACAGGCGGAGGAGCGACATGCCGTGTTCCTGCCAGTACCCCCAGAGTCCGACACATTCACGCTCCAAGAGGTCGGGGAATCTTTCCCGCACCCGAGAAGGACTGCCCCACTGTCATAGCTTCAGCGGAAGCTCTCGGCCCAAGCCCTCAGGCCCCAAACCTGACCAGGACCTGTCGCAATTCGACAGCCAGACCAACCTCAACGCTCAGAAGACCCAGCTGGGAAACCAGCCGCAGGCCGTCCTTCCTTCCCTCCCAGCACTCCCcgcacccccctcctcctccgtTTGCACGCCCCCCACCACCTCGGCCGCTTCGGGTGCCGCTCAGTCTTCCGCCATGGCCTCTGCCAGCGCCAAGCTGCAGTACCAGAGACTGCGCTCCGTACCCCAGCCCCGCAGGTTCTACTCCCCCCACCTGCCCCTGAAGGCCAAGAGCCTGTGCTCCAGAAGAGGGTCTGCCTATTTCTCCAGTCTGGAGAGTGAAGTATGA

Transcript

SKAU_T00400200

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00497	SBP_bac_3	Bacterial extracellular solute-binding proteins, family 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001638	Domain	Solute-binding protein family 3/N-terminal domain of MltF	Interproscan
IPR015683	Family	Ionotropic glutamate receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004972	Molecular Function	NMDA glutamate receptor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0017146	Cellular Component	NMDA selective glutamate receptor complex	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0060079	Biological Process	excitatory postsynaptic potential	Interproscan
GO:0060291	Biological Process	long-term synaptic potentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-