Gene detail

Detailed information of SKAU_T00399670 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00399670	LYSINE-RICH CEACAM1 CO-ISOLATED PROTEIN LYRIC PROTEIN	CM056396.1	9095637	9108147	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00399670

atttacatgtaGCGCCTTTAACGGAAACgcatggaattgcaccacacgtttgcgccgcTGCTCCCATAGATATCTATGGCTGCTCCCACAAGCTAGGTTGTTTGCTAACGTAATAGTAGCCATGGTATCTGTTCCCTTGTTGGAGGCGATGCTGTcaaattgaccccccccccccccggtggtaGATTTTCCTAAGCGTGCTCTGAGCTCTCTCTGTCTGTGGCTTGATGGTGTCGGAGGCGAAGATGGCAAAGAGCTGGCAGGACGCGGCGATTCAGCAGGCCGAGTTGATATCGAGTCGCCTGAGAGAGCTGCTGTCCTCCGGCCTAGGCCTACTCCGCTCCGAGCTCGGGGTTGATTTGGGTCTGAAGCCGGAGCTTTATCCGTCTTGGGTTATCCTCTTGACGGCGGTCATCGGGTTGCTTTTGATCGTGTTCTCGTGGGCCGCGGCCTGCAACGGACTCTTCAGTGGAAGAAAGCGTGGAGCCCGAGCGAGTGAAGAGAGCAGCGGCAGCACAAACGACTCGGTGACAAAGACCGTCAAAACCGACGAACAGAAGAAaaggaacaaaaagaaagcagTTGAAAAGAAAATTCAGCCAAATGGCCGTACGCTACCAGAGCTGCAGGAGGAAGATACCGTTACTGAAGAAATCCCGAAACCGTCCCCAGAGATCAAAACTGAAAAGgcaaagaaaaacaagaagaaaCCGAAAACTGACATCAAGCAACCGAATGCATCCTCTCCTAACGCGAAGGAACCAGACGAAGCAGGTGCCTGGGAGACCAAGGTCAGTAACCGGGAAAAGCGGCAGCAGCGCAGGAAGGATAAGGTGCCTGGCGATGGCTCCGGGAGCCCGGGAGGAGTGGACCCCACCGTCCGAGCGCCTGCGGAGCAGCTCACCGTCTCCGCCCCCGCCCCCGTGGGCCTGAGGAAGAGCAAAGGGGAGCCCCCACACGCGAAGCATGGCAAAGGAGAAGCGGCCGCATCGCAGGTGTCGGCCAAATGGAGCGAGACGTCGGCGGTGAACGGCGGGGGGTGGAACGACATGGCCGTGAAGCTCCCACCTCAGATGAGCTCCTTGGACGGGGAGAAGTGGCCCAACATCCTCAAAGAGGGTCCACCCGCCTGGGGCCAGGAGACTGCAGGGTCTTGGAGTGGCTTGGATGGGAGGTTGAAGAAGGACCTGAATCCAGTTTCCTTACCTGTCATTGGATTGAACACAACTGGTGGTGAGTCCCAGCCTGCTGCTGACCTCCAGTGCTACTGTAAGCCTGCTGTGGATGATGAGTGGTCTGGCCTGAATGGGATGAGAGAAGCTGACCCCAGCTCAGACTGGAACCCACCCTCAGAGATGTGGGGGAACTATGAGGAACCCCAACCAGAGAGCTCCGCCCCACCAAAGGACTCCACCTCTGAGGCTGTTAAGGCATCTGATGATgagggagagaagggggaggCCTCCAGCGGAGCAGGTGGCAAgaccaagaagaagaagaaaaagaagaagaaacaggAGGATGCTGGTTCTGCCCTCCAGGAGTCGGGGGAGCCGGAGAAgaaggaggcggaggaggagCTGAGCCCGCCGGTCCAGGAGACGATCCGGTCTGAGATTCCCGCCGCAGTCAACGAGAGGATATCGGTGCAAGAGAGCATGTCCCAGAAGCCCTCTTCACAAGCGCCACAAAGGCTAGCAGAGCCTGAGACCCTGGTACCCGCCGCCAAGCAGAAAAGCACTTCTCCCTCCTCACAGAAAAAATCTGAAGAGAACTGGGAGTCTCCAAAGCAAGTCCAAAAGAAAAAGAAGGCAAGAAGAGAAACATGAGTTTGAACTGGAGTCCTGAAGATTTATATGCAAAACTAATTCTGAATTATTCATGCAATAATtggagtgtttttttgtttgtttttttttaaagacaacaaaatcaacttttttttaatgctaAAAAAGCAAGCTTTGGAGCCAAACCAGCTCCAGCATCCCAATTCAGCACGTGGGGTCCTGAGCACTCGGCTGGCTATGTGCACTGTACGCCGCACTGCACGTTTTGAAGGAGGAATTAAACATTTCGGATTGACATGCAGTTGGGCACAAGAATAGAAATGTTTTTCTCAATTCCAATGTGAATCGTTTTGGAAGATGTACGTTTATATACTTAACTTAGACATTTTAAATATGTGTCAGGTATTTGCTTTGAAATTGAGAATATCATGAAAGAACTCCCCAAAGCTCGGGGTACACCTGTTGAATGCTCTTGCCCATTGCACGTGATGGTGTTGCTGCCATTTACTCCGTGGCAATGATCCAGGCCAGAGAAATTAATTGCATATGAAGTATGTCAAAGACGACACTAGGGGCAGTATTGTGCTGAAGCTGACAGTATCTGGTTAGTCCTCAAAATATGCCTGTGAAAACTAAACATTTAATTTGAGACTTTCCTATGTAATTTACTCTGATATGTTCCCCTTAGTGACTTTTTTTCCCTGTTGATTTAGTTTTGTTACTGAAATACCATTTCCCCCTTTCCTGAGGACAGATTTCTTTCTGGTTCTATCCTTGTACTCCTGTTGGTTAGTTCTGGAATTTTCTCTCTGGTGACCTCtttgaaatagaaaaaaaaagccaTGCTGTCTGTAAAGAATCAAAGGGCCTTTTCAGTGGACGGATCTCTTGTCGGTCAGTTCACTGTGCTGCCGGCTATATAAGTTCCTAAACATTTTCTTACATTGCAGTATTTAGAAGAATTTGTTAGAATGTAAAGATgtcatttctgattttcttttgttTGGTTACTTGTAGAGTGCACTATAATATGTAACCATGAAAGGGTTGGACATTTTGAACAGCTTTAATCCACGTGGATCTGATTTATTCAAACGGTTTTCAGGAATGAAATTGTATTGCCTTAACCTGTAAGTATATATGATGTGCTTTTTGGGTGTATTCACTGCTAATTTTTCTGCCCCCTCAAGTTGTCGGCAAAGGGCAGTGACTAGAGAAGGCCTCCACTGGGCTAATCTTAATTTTCACTTCAGAAATACATTTACTTGTGCATGAACCAGATAAACATGCTTGGTCACTGCAACTAAACTAAAAGATGGAGATTTTTCTTAATGACTAGTAATGCTGTGACAAGTACCACTCACTGTACATAGCCTTTTGTGTGTTAAAAAGTGGACATCTGTGGCATTTGCTGAAGCTTTGTTTTGCAAACGCCTTGTTTTGTGGGGCCTTTGAATGGGAAAAGCGTATTGCAATGCATCTATACTCAGATTTGTGGCTCTTTGCCATAGTCCTTTTGTGGATCAGTCTGTCTGTGGTAATGGCGGTGCTGGAGTGTAGCTTCAGGAAAACCCTGCCTTATTAGTGATGGTCTGATggattgtttttgtgtgttttttgttttcttttataaaCAAATAATGACTACATTTTAAATGGGTGTATTTCTACCCGTTTTTGGCTTATAGAAACCAGTGtgattgcatatatatatataataaggtgtttgttaattgaaatgatatttcTAAATTGATTTGTTTTGAATAAATTGAAACTTGATCTGCTGAACACGCTTTTTGCTTGTTAGCTTGATGGCAGCGCTGTCGGAGGAAGGAGCACTCGTACTTAAGCATGCCTGAGCCCATTCTGAATACTTTCCAATTACGTGATTTAAAAACCTACTTCCTCCCTGATGTGGAAAATTAATGTAAACAAAATTAATGTAATCTACAGAAAATGTCCCTTGATCCCTATACAAGTGGCATTTAATTGCCAAAGGTCATGTATTTTATTATTCTCAATACGGATTACTAGTTTTATTAAATATAGTATTGTGTATTATCCTAATATTGCCAAATACCGGCCTTGTGTTGGTGTAGAATACATTCTTTTTCACAAGGAAGTAAAAAAGCATGTGCTGGGAATGGGATTGTATTTAATTGGTAAGACTACACAGCCTTTTCTACATCTTGCAGTGACTTGCCTTGAGTAGATGTGGTTGTTCACACCCTTCAAAAATAGAAATATCACCAGCTGGATGCTTCATTTACACTGTCAGCTGTAATGGGATAATGGGAGTTTATTTTGTGGATGGGATGATGCACATACAGTTTTAACTACTTAGGATAGTGCTAATCATCACCACCACTGCTATACTGTCTGAGAAAATGGATAGTTACTGTCAGTGTGCGGTACAGCGTACATGCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15686	LYRIC	Lysine-rich CEACAM1 co-isolated protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031402	Family	Protein LYRIC	Interproscan
IPR052305	Family	Transcriptional Regulators and Tumor Expansion	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23251	LYSINE-RICH CEACAM1 CO-ISOLATED PROTEIN LYRIC PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043066	Biological Process	negative regulation of apoptotic process	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0045766	Biological Process	positive regulation of angiogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-